Onion yellows phytoplasma OY-M: PAM_621
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Entry
PAM_621 CDS
T00154
Symbol
uvrD
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
poy
Onion yellows phytoplasma OY-M
Pathway
poy03420
Nucleotide excision repair
poy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
poy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PAM_621 (uvrD)
03430 Mismatch repair
PAM_621 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poy03400
]
PAM_621 (uvrD)
Enzymes [BR:
poy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PAM_621 (uvrD)
DNA repair and recombination proteins [BR:
poy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PAM_621 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PAM_621 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
AAA_12
DEAD
DUF3391
T2SSE
ResIII
GpA_ATPase
CarD_TRCF_RID
Helicase_RecD
Tudor_1_RapA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAD04706
UniProt:
Q6YPV4
LinkDB
All DBs
Position
703793..706036
Genome browser
AA seq
747 aa
AA seq
DB search
MFSNKTNFLEKLNKPQLAAVTSNAKSFYLAAGAGTGKTTTLNAKIAYLIEQKNLPSNQIL
ALTFTNKAAKQMQEKLAKMIGQEKTKGITICTFHSLGNQILRKFIPFLPFSYRTNFKILD
DNDCKKIIKDILKEMNIDPKRIKISELRKNISAIKRKHEPQNKDTLQHATQKEHNFQREN
RYEFEMPIKAKYQIFLQNNNLVDFDDLILYTHQLLQENADVRAFYQQKFQYLLVDEFQDT
DFFQYQILTLLAQNHQNIFVVGDPDQNIYSFRGARFENSQLFLNKFSPQLAFLEQNYRSS
KNILDKANLLIKHNEDHPFKKNLKSTKSGGEPVIYKFFSDYKEETDYITKTIQNLVLQGI
CSYQDFTILYRTNILGRPLEEKFLANSIPYQVFGGISFYQSKVVKDFLAYLNVIANPSQD
FDFKRIINTPKRGIGTTSLAHLEQLAQEKNLALFDALNYLDQTPIQPNTKTKLNEFQKLI
TALRQELINDSFDCLSDIITHIDEKINYCHKNDETYKMQSIKDSEPALHYIEELKSVFMQ
AEKNLEGNIFEKLTQLLDQISLYSEINEQTEQDPKTPSKNDRVKLSTIHKVKGLEFRVVF
IAAFEDIFFDCNQKEKSDLEESRRLAYVAITRAEEKLFLTGAYQRVSYGKQIDSQPSRFS
QEMGFFSKETPRPNYFSPHLFQPNQSNQVSCTNENGFFQKGDKVKHKTLGLGVVEAIMQD
LIQVRFINSQNIKIFENTTAFLAKIKE
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgttttccaataaaaccaattttttagaaaaattaaataaaccccaacttgcagcagtc
acaagcaatgctaaatctttttatctagcagcaggagcaggcactggtaaaaccaccact
ttaaatgctaaaattgcttatttaatcgaacaaaaaaacttaccaagcaaccaaatttta
gcccttactttcaccaacaaagctgccaaacaaatgcaagaaaaacttgccaaaatgatc
ggtcaagaaaaaaccaaaggcattactatttgcacttttcactctttgggaaaccaaatt
ttgagaaaatttatcccctttttaccattttcatatcgcaccaattttaaaattttagat
gacaacgactgcaaaaaaatcatcaaagacattttaaaagaaatgaatatcgaccccaaa
agaataaaaattagcgaattaagaaaaaacatttctgctatcaaaagaaaacacgaacca
caaaacaaagacactttgcaacacgcaacccaaaaagaacacaattttcaacgtgaaaac
agatacgaattcgaaatgccaatcaaagctaaatatcaaatttttttgcaaaacaataat
ttagttgattttgatgaccttattttatatacgcaccaactgctccaagaaaatgccgat
gtaagggctttttatcaacaaaaattccaatatttattagttgatgaattccaagatact
gattttttccaataccaaattttgactcttttagcccaaaaccaccaaaatatttttgta
gtaggagaccctgaccaaaacatttattcttttcgaggagccagatttgaaaacagccaa
ttgttcttaaataaatttagtcctcaattagcttttttggaacaaaattaccgttcttct
aaaaacatcctagacaaagccaaccttttgattaaacacaacgaagaccatccttttaaa
aaaaatctcaaaagcactaaaagcggaggcgaacctgttatttacaagtttttttcagat
tataaagaggagacagactacatcacaaaaaccatccaaaaccttgttttacaaggtatt
tgcagctatcaagattttactattttatatcgtactaacattttgggacgccctttggaa
gaaaaattcttagcaaacagcattccttatcaagtttttggaggcatttccttttaccaa
agcaaagtagtcaaagattttttagcttatctcaatgttattgcaaatccctcacaagat
tttgatttcaaacgcatcattaacacccctaaaagaggaattggaacaacttcacttgca
catctagaacaacttgcccaagaaaaaaacttagctctttttgacgcccttaactaccta
gaccaaactccaattcaaccaaataccaaaactaaactaaacgaatttcaaaaattaatt
acagctttacgccaagaattaattaatgattcttttgactgtcttagtgatataattact
catattgatgaaaaaattaattattgtcacaaaaacgatgaaacttacaaaatgcaatca
ataaaagattctgagcctgctttacattacatcgaagaattaaaatcagtttttatgcaa
gcagaaaaaaatttggaaggaaacatttttgaaaaactaacccaacttttagatcaaata
tctttgtatagcgaaattaacgaacaaaccgaacaagaccccaaaaccccaagcaaaaac
gatcgcgttaaactttctactattcacaaagtcaaaggtttagaatttagagtggttttt
atagctgcttttgaagatattttttttgattgcaaccaaaaagaaaaaagcgatttagaa
gaatcaagacgtctagcttatgtagcaattacaagagccgaggaaaagttatttttaact
ggggcttatcaaagagtttcatatggcaaacaaatagacagtcaaccttcacgcttttca
caagaaatgggctttttttcaaaagaaaccccaagaccaaattatttttccccacattta
tttcaaccaaaccaatcaaaccaagtatcttgcactaatgaaaatggcttttttcaaaaa
ggagacaaagtcaaacacaaaactctcggcttgggcgtagtggaagccatcatgcaagat
ttaatccaagtacgctttataaattcccaaaatataaaaatatttgaaaatacaactgct
tttcttgctaaaataaaagagtaa
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