Onion yellows phytoplasma OY-M: PAM_628
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Entry
PAM_628 CDS
T00154
Symbol
rpoD
Name
(GenBank) DNA-directed RNA polymerase sigma subunit
KO
K03086
RNA polymerase primary sigma factor
Organism
poy
Onion yellows phytoplasma OY-M
Brite
KEGG Orthology (KO) [BR:
poy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PAM_628 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poy03021
]
PAM_628 (rpoD)
Transcription machinery [BR:
poy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PAM_628 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BAD04713
UniProt:
Q6YPU7
LinkDB
All DBs
Position
712396..713778
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AA seq
460 aa
AA seq
DB search
MEFDNIIKTLNEQAGSEQKLTSQLIMSFLQNQNIKIPYQQIAQSLKEQGIQIISCETQAA
PSLNENPNQNDTQPQTNTTNDDFTDLDSELTNANLENTDDNKDEDNTQDSEEDIQDFDIS
EEDLISDEKLIELEEDEDEKISKIHSDIKMDDSVRMYLKEIGQIPLLSLAEEQKKSILVF
LGKQAKQKLAKHKTKEIELSEEQLQEAHDQIEQARRAKDILVESNYRLVVSIAKRYIGRG
ILFLDLIQEGNMGLMRAVDKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIPVHIVE
TINKMALCTRKLTQKLKKKPTVEELADKMNISAEKIRSIQYIEKKPISLEAPARENEEDE
TSLGDFISDPNILSPHEYMMKEVTQKLLDEVLENTLTDREEKVLKMRYGLLDGKTHTLEE
VGTLFGVTRERIRQIESKALRRLRTPAKQSKLKSLYHNHK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggaattcgataacataatcaaaactttaaatgagcaagctggaagcgaacaaaaacta
acatctcaattaattatgtcttttttgcaaaatcaaaacataaaaataccatatcaacaa
atagcacaaagcctaaaagaacaagggattcaaattatttcttgcgaaacacaagcagct
ccatctctaaatgaaaaccccaatcaaaatgatacgcaaccccaaacaaacaccaccaat
gatgattttactgaccttgattccgaattaacaaatgcaaacttagaaaacacagatgac
aacaaagatgaagacaacacacaagactcagaagaagacatccaagattttgacatttct
gaagaggacttaatatcagatgaaaaactcatagaattagaagaagacgaagatgaaaaa
atttctaaaatccattctgatattaaaatggatgactcagttcgtatgtatttaaaagaa
attggtcaaattcctttgctttcgctagcagaagaacaaaaaaaatccattttagttttt
ttaggaaaacaagccaaacaaaagcttgccaagcacaaaaccaaagaaattgaattatcc
gaagaacaactccaagaagcacatgaccaaatcgaacaagcaaggcgcgccaaagatatt
ttggtagaatccaattatagattagtagtttccattgccaaacgatatattggaagaggc
attttgtttcttgatttaatccaagaaggcaacatgggcttaatgcgtgcagtagataaa
ttcgattatcaaaaaggatttaaattttctacctatgccacttggtggattagacaagcc
atcacaagagcgattgccgatcaagcaagaactatccgaattcctgtccacatcgtagaa
actattaataaaatggcactttgcactcgcaaattaactcaaaaacttaagaaaaaacct
acagttgaagagttagccgacaaaatgaatatttctgctgaaaaaattcgcagcatccaa
tatattgaaaaaaaacccatctctttggaagctcccgcaagagaaaacgaagaagacgaa
acttctttgggggattttatctcagatcccaacattttatccccccacgaatacatgatg
aaagaagtaactcaaaagcttttagatgaagtcctagaaaataccttaactgaccgcgag
gaaaaagtattaaaaatgcgctatggtcttttagatggcaaaacccacactttagaagaa
gtaggcactttatttggagttactagagaaagaatccgccaaattgaatccaaagctcta
agacgactcagaactccagctaaacaaagcaaattaaaaagtttgtaccacaaccacaaa
taa
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