Pontivivens ytuae: I0K15_00410
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Entry
I0K15_00410 CDS
T06919
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
poz
Pontivivens ytuae
Pathway
poz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I0K15_00410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poz03019
]
I0K15_00410
03009 Ribosome biogenesis [BR:
poz03009
]
I0K15_00410
Enzymes [BR:
poz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I0K15_00410
Messenger RNA biogenesis [BR:
poz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I0K15_00410
Ribosome biogenesis [BR:
poz03009
]
Prokaryotic type
rRNA processing factors
I0K15_00410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QPH54276
UniProt:
A0A7S9QDL8
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All DBs
Position
125629..128493
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AA seq
954 aa
AA seq
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MPKKMLIDATHSEETRVVVVDGQKVEEFDFESLNKRQLSGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALIAEQEAEEQARRAEEEEEEKPKPRRGRSRSR
SRSAAAKDGAPADETVSAEVPVDANEDAAPVADDPAEAPIRTDSDEAIAEAVTDPAADVT
PPVDVVVDEATPAAATEQSLPEEAVRGVLEEPMLEGDGPDATSGLDEASDLVDTPEGEPL
PEGETPTDAEADDASVPAAEEIESDDDDVEEVRRDTRRRPKMRRYKIQEVIKVRQIMLIQ
VVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIAGEIEVPK
GAGLIIRTAGAKRTRTEIKRDYEYLIRQWEQIRDLTMKSIAPQLIYEEGSLIKRSIRDLY
SRDIDEVFVEGPEGYREAKDYMRMLMPSHAKNVKLYQDQVSLFGRHQVESYLGQMFNPTV
QLKSGGYIVIGVTEALVAIDVNSGRSTKEGSIEETALKTNLEAADEVARQLRLRDLAGLI
VIDFIDMDERKNNAAVEKRMKDALKNDRARIQVGRISSFGLLEMSRQRLRPGMLEASTQP
CPHCHGTGLVRSNDSLGLSIIRELEEEGVRQRCKEIVLTAPVGVANYLLNVKREHIAMIE
TRYGIAIQINGDPHLVSPEHKMERFKTASRVVVQDATVGAIQVDGLDLDEIHDQEVEEDV
AEVVETREDDEDQPKKKRRRRRRRGGRNRGENGEGKTQDDANGEGSEEETSTEESAEEPT
DAAPEQAADAETEVETEEKPAKPKRSRSRSRGRKKAEQPEDTSAEAEAREDTGPAAEDVT
PPDAGEEPALATEDTKPEAETVDAETVAAPISEEAPVDAVVREETPAAAADEIADAQPVD
ESGPAPEVMPEAEQPEEVATAPEEPVPAETAPDPTTEDADRPKRKGWWARTIGS
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaaagatgcttatcgatgccacccacagcgaggaaacgcgggtggtcgtcgtc
gacggccagaaggtcgaagagtttgatttcgagagcctgaacaagcgacagctctccggc
aacatctatctggcgaaggtcacgcgggtcgaaccctcgctccaggccgcctttgtcgat
tatggcgggaaccggcacggcttcctcgccttctccgaaatccatccggactactaccag
atccccgtcgcggaccgtgaggcgctgatcgccgagcaggaggccgaggaacaggcccgc
cgcgccgaggaggaggaagaggaaaagccgaagccgcgccgcggccgctcgcggtcccgc
tcccgctcggcggcggcgaaggatggcgcaccggccgacgagaccgtcagtgccgaggtt
ccggttgatgcgaacgaggacgcggcccccgtcgcggacgatccggcggaagcgccgatc
cgcaccgacagcgacgaggccatcgccgaggcggtaaccgatcccgccgcggacgtcacg
ccgccggtcgatgtcgtggtggatgaggcgacgcccgccgccgcgaccgaacagtccctg
cccgaggaggccgtgcgcggcgtgctcgaagagccaatgctcgaaggggacggcccggac
gcgaccagcggcctcgacgaagcctccgacctcgtggacacgcccgagggcgaaccgctg
cccgaaggcgagaccccgaccgatgccgaggccgacgatgcctccgtccccgcggcggag
gagatcgagagcgacgacgacgatgtcgaggaggtccgccgcgacacccgccgtcgtccc
aagatgcgccgctacaagatccaggaggtcatcaaggtccgccagatcatgctgatccag
gtggtcaaggaggagcgcggcaacaagggcgccgccctcacaacctatctgagcctcgcg
ggccgctactgcgtcctgatgcccaacaccgcccgcggcggcggcatctcccgcaagatc
accaatgcggccgaccgcaagaagctcaaggagatcgcgggcgagatcgaggtgccgaag
ggcgccggtctcatcatccgcacggcgggcgccaagcgcacccggaccgagatcaagcgc
gactacgaatacctcatccgccagtgggagcagatccgcgacctgacgatgaagtcgatc
gcaccgcagctgatctacgaggaaggcagcctcatcaagcgctcgatccgcgacctctac
tcccgcgacatcgacgaggtgttcgtggagggaccggaaggctaccgcgaggccaaggac
tacatgcggatgctgatgccgagccacgcgaagaacgtgaagctctaccaggatcaggtc
agcctcttcggccgccaccaggtggagagctatctcggccagatgttcaacccgaccgtc
cagctcaagtccggcggctacatcgtcatcggcgtgaccgaggcgctggtcgccatcgac
gtgaactccggcaggtcgaccaaggaaggctcgatcgaggagacggcgctcaagaccaac
cttgaggccgcggacgaggtggcgcgccagctccgccttcgtgacctcgcgggcctcatc
gtcatcgacttcatcgacatggatgagcgcaagaacaacgccgccgtcgagaagcggatg
aaggatgcgctgaagaacgatcgcgcccggatccaggtgggtcgcatctcctccttcggt
ctcttggagatgagccgccagcggctgcggcccggcatgctcgaggcctcgacccaaccc
tgcccgcattgccacggcacgggcctcgtccggtcgaacgacagcctcggcctctcgatc
atccgggagttggaagaagagggcgtgcgccagcgctgcaaggaaatcgtcctgaccgcg
ccggtgggcgtggcgaactacctcctgaacgtgaagcgcgagcatatcgcgatgatcgag
acgcgctatggcatcgcgatccagatcaacggcgacccgcatctcgtaagcccagagcac
aagatggagcggttcaagaccgcgagccgcgtcgtggtgcaggacgccacggtcggcgcg
atccaggtggacggcctcgacctcgacgagatccacgaccaggaggtcgaggaagacgtc
gccgaggtggtggagacccgcgaagacgacgaggaccagccgaagaagaagcgccgccgg
cggcgccggcgcggcggtcgcaatcgcggcgagaacggcgagggcaagacgcaggacgac
gcgaacggcgagggctccgaggaggagacctcgacggaggagtcggcagaggaaccgacg
gatgctgcgcccgaacaggccgccgatgctgaaaccgaggttgagaccgaggagaagccc
gcgaagccgaagcggtcccgctcccgctcgcgcggccggaagaaggcggagcagcccgag
gacacgtccgccgaggccgaggcccgcgaggacaccggccccgccgccgaggacgtgacg
ccgccggatgcaggcgaggaacccgcgctcgcgaccgaggacacgaagcccgaggccgag
acggtggacgccgaaaccgtagctgcgcccatcagcgaggaggctccggtcgacgccgtg
gtccgcgaggaaacgcccgccgccgcagccgacgagatcgccgatgcgcaacccgtcgac
gaaagcggcccggcgccggaggtgatgcccgaggcggagcagccggaggaggtcgcgacg
gcccccgaagagcccgtcccggccgagaccgcgcccgatccgacgaccgaagatgcggac
cggcccaagcgcaagggctggtgggcgcgcaccatcggaagctga
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