Pontivivens ytuae: I0K15_01920
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Entry
I0K15_01920 CDS
T06919
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
poz
Pontivivens ytuae
Pathway
poz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
poz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
I0K15_01920 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poz03021
]
I0K15_01920 (rpoD)
Transcription machinery [BR:
poz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I0K15_01920 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
STX6_10_61_N
DUF5788
Motif
Other DBs
NCBI-ProteinID:
QPH54563
UniProt:
A0A7S9QD30
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All DBs
Position
417655..419613
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AA seq
652 aa
AA seq
DB search
MAANDLEQRKDEDQESGAGSMLDMSQAAVKKMIAQAKARGYITYDELNQVMPPDQVSSEQ
IEDVMAMLSEMGINVIEPEEAEEEGEKPAEPEASTSREVATTSASNETLDRTDDPVRMYL
REMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWREELMEELIMLRDVI
DLETTFGASMDDDEEEEVVADEEQPAAEETSEPKAEGSGDEDDEEDEQANLSLAAMEAQL
KPQVLETLDRIAGDYARLAEMQDDRMSAALNEASTFTSAQEREYQRLRSEIVELVNSLHL
HNNRIEALVDQIYGINRKIMSLDGEMVKIADQARVNRKEFISEYRGAELEPGWLDRVTAK
SGRGWSTLGERYREKIDDIRAEMGEVGQYIGVDISEFRRIVAQVQKGEKEARIAKKEMVE
ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR
SIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIA
KEPISLETPIGDEEDSQLGDFIEDKNAVLPLDAAIQGNLKETTTRVLASLTPREERVLRM
RFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcagccaacgacctcgaacagcgcaaggacgaggaccaggagagcggcgcaggctcc
atgctcgacatgagccaggctgcggtcaagaagatgatcgcgcaggcgaaggcccgcggg
tacatcacctatgacgagctcaaccaggtgatgccgccggatcaggtctcctccgagcag
atcgaggacgtgatggcgatgctctccgaaatgggcatcaacgtcatcgaacccgaagag
gccgaggaggagggcgagaagcccgccgagcccgaagcctccacctcccgcgaagtggcg
acgacctccgcctccaacgagacgctggatcgcaccgacgacccagtgcgcatgtacctg
cgcgagatgggctcggtggagcttctgagccgcgagggcgagatcgcgatcgcgaagcgc
atcgaggccggacgcaacaccatgatcgcgggcctctgcgaaagcccgctgaccttccag
gcgatcacgatctggcgcgaggagctcatggaggagctcatcatgctgcgcgacgtgatc
gacctcgagaccaccttcggcgcgtcgatggacgacgacgaggaagaggaggtcgtcgcc
gacgaggagcagcccgccgccgaggagacctccgagccgaaggccgagggatccggcgac
gaggatgatgaggaggacgagcaggccaacctctccctcgccgcgatggaggcgcagctc
aagccgcaggtgctcgaaaccctcgaccgcatcgcgggcgattacgcgcgcctggccgaa
atgcaggacgaccgtatgtcggccgcgctcaacgaggcgtcgaccttcacctccgcgcag
gagcgcgaataccagcgcctgcgctcggagatcgtggagctggtgaactcgctgcacctc
cacaacaaccggatcgaggcgctcgtcgatcagatctacggcatcaaccgcaagatcatg
tcgctcgacggcgagatggtgaagatcgccgaccaggcccgcgtgaaccgcaaggagttc
atctccgaataccggggcgcggagctggagccgggctggctcgaccgcgtcaccgccaaa
tcgggccgcggctggtccacgctgggcgagcgctaccgcgagaagatcgacgacatccgc
gccgaaatgggcgaggtcggccagtatatcggcgtcgacatctccgaattccgccggatc
gttgcccaggtccagaagggcgagaaggaagcgcgcatcgcgaagaaggagatggtggag
gcgaacctgcgcctcgtgatctccatcgcgaagaagtacacgaaccgcggcctccagttc
ctcgacctgatccaggagggaaacatcggcctgatgaaggcggtggacaagttcgagtac
cgccgcggctacaagttctccacctatgcgacgtggtggatccggcaggcgatcacccgc
tcgatcgccgaccaggcgcgcacgatccgcatcccggtccacatgatcgagacgatcaac
aagctggtgcgcaccggccgccagatgctgcacgagatcggccgcgagccgacgccggag
gaactggccgaaaagctccagatgccgctggagaaggtgcgcaaagtgatgaagatcgcc
aaggagccgatctcgcttgagacgcccatcggcgacgaggaagacagccagctcggcgat
ttcatcgaggacaagaacgccgtcctaccgctcgacgccgccatccagggcaacctgaag
gagacgacgacgcgggtgctggcgtcgctcacgccgcgcgaggagcgggtgctgcgcatg
cgcttcggcatcggcatgaacaccgaccacacgctcgaagaggtcggccagcagttcagc
gttacccgcgagcggatccgccagatcgaggcgaaggcgctgcgcaagctcaagcacccg
agccggagccgcaagctgcgcagcttcctcgaccagtaa
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