Pontivivens ytuae: I0K15_09250
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Entry
I0K15_09250 CDS
T06919
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
poz
Pontivivens ytuae
Pathway
poz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I0K15_09250 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
poz03021
]
I0K15_09250 (rho)
03019 Messenger RNA biogenesis [BR:
poz03019
]
I0K15_09250 (rho)
Transcription machinery [BR:
poz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
I0K15_09250 (rho)
Messenger RNA biogenesis [BR:
poz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I0K15_09250 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_22
OB_RNB
ATPase_2
AAA
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QPH55887
UniProt:
A0A7S9LV79
LinkDB
All DBs
Position
complement(1892154..1893425)
Genome browser
AA seq
423 aa
AA seq
DB search
MDIERLSLAELKAKSPADLLHMAEELEIENASTMRKGDMMFSILKEMAEDGVEISGDGVL
EVLQDGFGFLRSPEANYLPGPDDIYVSPSQIRKFSLRTGDTVDGVIRAPKDGERYFGLVK
VSQINFEEPEKARHKVHFDNLTPLYPDERLTMEIDDPTIKDKSARVIDLVAPIGKGQRSL
IVAPPRTGKTVILQNIANSIEKNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEP
ATRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKIADKRVF
PAIDIMKSGTRKEDLLVEKADLTKMFVLRRILNPMGTTDAIEFLLGKLKQTKNNSEFFDS
MNT
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggatattgaacgactctcgctcgccgagctgaaggcgaagagccctgctgatctcctg
cacatggccgaagagctggaaatcgagaacgcgtcgacgatgcgcaagggcgacatgatg
ttctcgatcctgaaggagatggctgaggatggggtcgagatctcgggcgacggggtgctg
gaggtgctgcaggacggcttcggtttcctgcgctctccggaagcgaactacctgccgggt
cctgacgacatctatgtctcgccgtcacagatccggaagttctccctgcgcacgggtgac
acggttgatggggtgatccgggcgccgaaggacggggagcggtacttcgggctggtgaag
gtctcccagattaatttcgaggagccggagaaggcgcggcacaaggtgcatttcgataac
ctgacgccgctctatcccgatgagcggctgactatggagatcgacgatccgaccatcaag
gacaagtcggcgcgggtgatcgacctggtggcaccaatcgggaagggacagcgatcactg
atcgtggcgccgccgcggacgggtaagacggtgatcctccagaacattgcgaactcgatc
gagaagaaccatccggagtgctacctcatcgtgctgctgatcgatgagcggcccgaggaa
gtcacggacatgcagcggtcggtgaagggcgaggtcgtgtcctcgacatttgacgagccg
gcgacgcggcacgtggcagtgtccgagatggtgatcgagaaggcaaagcggctggtggag
cacaagcgggatgtggttatcctgctcgactcgatcacgcgcctaggtcgtgctttcaac
acggtggttccgtcctcgggtaaggttctgaccggaggtgtggatgcaaatgcgttgcag
cgtccgaagcggttcttcggtgcggcgcgaaatatcgaggagggcggctcgctcaccatc
atcgcgacggcgctgatagatacgggcagccggatggacgaggtgatcttcgaggagttc
aaggggaccggtaactccgagatcgttctggatcggaagatcgccgacaagcgcgtcttc
ccggcgatcgacatcatgaagtcgggcacgcggaaagaggatctgttggtcgaaaaggcg
gatctaacgaagatgtttgtgctgcgccggatcctcaatcctatgggtacgactgatgcg
atcgagttcctgctcggcaagctcaaacagacgaagaacaactcggaattcttcgactca
atgaatacgtga
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