Pontivivens ytuae: I0K15_16655
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Entry
I0K15_16655 CDS
T06919
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
poz
Pontivivens ytuae
Pathway
poz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I0K15_16655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poz03019
]
I0K15_16655
Enzymes [BR:
poz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I0K15_16655
Messenger RNA biogenesis [BR:
poz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I0K15_16655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Terminase_6N
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QPH56251
UniProt:
A0A7S9LVU3
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All DBs
Position
3352980..3354218
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AA seq
412 aa
AA seq
DB search
MTFAGFGLAKPITDALARAGFETPTPIQAQAIGPQLEGRDILGLAQTGTGKTAAFALPIL
HHILGMKGRPTPGTARALILAPTRELAVQIQDEFRRFAGGARISTCLVLGGTSRGGQIRM
LSRGVDVLIATPGRLTDLVDDRKVRLDEVRFVVLDEADRMLDMGFVKPVKRIVSMLHPRR
QSALFSATMPSEISGLVETFLTDPVRVEVAPQSTVAGKVEQSVELMDGPKKRARLAEIVS
GPGVERAIVFARTKRGADRVAANLVKDGVAADAIHGNKAQNARQRALGAFKLGKVRVLVA
TDIAARGIDVKGITHVVNYDLPDEPENYVHRIGRTARNGADGVAVTLCAPDEEKKLRAVE
KITGEVLHPDGPAAHRQPRGPRKAANGAPRKDGEQGRPRRRRRRGPPRSKAA
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgccggctttggccttgccaagccgatcaccgacgcgctcgcgcgggcgggc
ttcgagacgccgaccccgatccaggcgcaggccatcgggccacagctcgagggccgcgac
atcctcggcctcgcgcagacgggcaccggcaagacggcggccttcgcactgccgatcctg
caccatatcctcggcatgaagggccgtccgacgcccggcaccgcgcgtgcgctgatcctc
gcgccgacgcgggagctcgccgtgcagatccaggatgagttccgccgcttcgccggcggg
gcgcgcatctccacctgcctggtgctcggcggcacctcgcgcggcgggcagatccgcatg
ctctcgcgcggcgtggacgtgctgatcgcgacgccgggccggctgacggacctcgtggac
gatcgcaaggtgcgcctcgacgaggtgcgcttcgtggtgctggacgaggccgaccggatg
ctcgacatgggcttcgtgaagccggtcaagcgcatcgtctccatgttgcacccgcggcgg
cagtccgcgctcttctccgccaccatgccgtccgagatctcgggcctcgtcgagaccttc
ctcaccgatccggtgcgtgtcgaggtcgcgccccagtccacggtcgcgggcaaggtcgag
cagtcggtcgaactgatggacgggccgaagaagcgcgcccgcctcgccgagatcgtcagt
ggcccgggtgtcgagcgcgccatcgtcttcgcccgcaccaagcggggcgcggaccgtgtg
gcagccaacctcgtgaaggacggcgtggccgccgacgcgatccacggcaacaaggcgcag
aacgcgcggcagcgcgctctaggggccttcaagctcggcaaagtccgggtgctggtggcc
accgacatcgcggcgcgcggcatcgacgtgaagggcatcacccacgtggtgaactacgac
ctgcccgacgagcccgagaactacgtccaccgcatcggccgaaccgcgcggaacggcgcg
gatggcgtggcggtgacgctctgtgccccggatgaggagaagaagctgcgcgcggtcgaa
aagatcaccggcgaggtgctccaccccgacggcccggcggcacaccgccagccgcgcggc
ccgcgcaaggccgcgaacggcgccccgcgcaaggacggcgaacagggccgcccccgccgg
cgccgccgccgcggcccgccccgctcgaaggcggcctga
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