Komagataella phaffii: PAS_FragD_0003
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Entry
PAS_FragD_0003 CDS
T01092
Name
(RefSeq) Subunit of the CCR4-NOT complex
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ppa
Komagataella phaffii
Pathway
ppa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAS_FragD_0003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_FragD_0003
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PAS_FragD_0003
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PAS_FragD_0003
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Prefoldin
DUF1192
STX6_10_61_N
Motif
Other DBs
NCBI-GeneID:
8200508
NCBI-ProteinID:
XP_002494381
UniProt:
C4R9C7
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Position
4:1772440..1774053
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AA seq
537 aa
AA seq
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MDRVFKRIGEGLYIFDSLYDRHQSCSNSSQKDKLEADLKKEIKKLQRFREQVKSWQATNE
IKEKRRLIENRKLVEIAMEKFKSVERGSKQKAYSDEVLMGISESMEPEEAAKFAAIEFLQ
KSLDEIERQVEGLEAEIDKASFSKKSRKAHSDIDEHQEVLEVTLERLHWHQEKLEIALRL
LENDILKPEKLMQIKDDLEYYLESNQEYDFMEDDTLYDDLNLNVDQSLAHEVTTSFCKAE
DHDVSLSPLPSTDSTSSVHKKLKEDPQKSSFGSQVLSSNSASPVSTQSLMDSGPQNSKLL
TTSLRPASVPVKPSSDVRWAVAINKTDKLFQAKPISSSSEQFTSLNGSLTSSHNQQLIPQ
DQNRISITDSTIASMPPGIQNLILGFLDSRKSSKKLMKSNAIYTQAWNFSSYFSPPETAI
PSSLESQRVAMIWNSIRGSADLHSLVQRVDTATLFYAFYFASTPYERVVSKNVLVNLRHW
KLHHNQKLWFQRFGQPKSVGEGFEIADFKVFDAASWSLKEMLNYKFEYSFLFSDNAR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggaccgggtgtttaaacgtattggggaaggtctatatatctttgattccctgtacgat
aggcatcaaagctgttcaaactcatcacagaaagataagctggaggctgatctaaaaaag
gaaatcaagaagctgcagcgattcagagaacaagtcaagagttggcaggcgaccaatgaa
atcaaagagaagaggagattgatagagaacagaaagctcgttgaaatagccatggagaaa
ttcaaatcagtggaaaggggctccaagcaaaaagcctattcggacgaggtactaatgggg
atctcagaaagcatggaaccagaagaagctgcaaagtttgctgcaatagagtttctgcag
aaatctctagatgagattgaacgacaggtggaagggcttgaagctgagattgataaggct
agtttctccaaaaaaagtcgcaaggctcattctgacattgacgagcatcaagaagttttg
gaagttacgcttgagcgactccattggcaccaagaaaagttagagattgcacttcgttta
ttagagaatgatattttgaagcctgaaaagttgatgcagatcaaggatgatttggaatat
tatttggaaagcaaccaagagtacgattttatggaagatgatactctttatgacgacctc
aatctaaatgtagaccaatctttggcgcatgaggtcactacttccttttgtaaagcagaa
gaccatgatgtttccttgagccccctcccttcaacagatagcacttcctcagtacataag
aaactcaaagaagacccccaaaaaagctcttttggttcacaagttctttcaagtaactct
gcgagtccggtaagcactcaatccctcatggacagcggaccccagaattccaaactacta
acaacttctttacgacctgcctcagtgccagttaaaccttcgtcagacgtgagatgggct
gttgccataaataaaacagacaagctgttccaggcaaaacccatttccagctcttcagag
cagtttacctctctgaatggctccttgacctcctctcataaccagcagcttatcccccaa
gatcaaaatcgaatatcaataacagatagtacgatagcctcaatgcccccaggtattcaa
aacctgatccttggttttttggattcaaggaagagttcgaagaaactcatgaaaagtaat
gcgatttacacacaagcatggaatttctcttcatatttttctccaccagaaactgctata
ccttcttcattagaatcacagagagttgcaatgatttggaattcaattcgtggaagtgcc
gatttgcattctttggtgcaacgagtggatacagcaaccttattttacgccttttacttt
gcgtcaacgccttatgaaagggttgtttctaagaatgtacttgtaaatttaagacattgg
aaactgcaccacaaccaaaagttatggttccaacgttttggccaacctaaatctgtcggg
gagggctttgagattgccgatttcaaagtgtttgacgctgcttcatggagtctgaaagag
atgcttaactacaagtttgagtacagtttcttattttctgacaatgcaagataa
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