Komagataella phaffii: PAS_chr1-1_0004
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Entry
PAS_chr1-1_0004 CDS
T01092
Name
(RefSeq) U3 small nucleolar RNA-associated protein
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
ppa
Komagataella phaffii
Pathway
ppa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PAS_chr1-1_0004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppa03009
]
PAS_chr1-1_0004
Ribosome biogenesis [BR:
ppa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
PAS_chr1-1_0004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40
ANAPC4_WD40
EIF3I
WDR55
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
PEP5_VPS11_N
PQQ_2
Beta-prop_SPT8
WDR90_beta-prop_4th
Mcl1_mid
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
8197901
NCBI-ProteinID:
XP_002489638
UniProt:
C4QVT4
LinkDB
All DBs
Position
1:complement(536447..539260)
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AA seq
937 aa
AA seq
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MPVPVNSSLKKRKSERKAEAVRPSKIFSPFRVLGKVSNEIPFAIGTLGHTFYIVTSVDRA
FQIYDANTLHLLFVSNTQTPSKINALAAHFHYVYAAWDNKIGIYRRGILEHVLSCETENF
IQQILVFGDFVICTTFTSNEIFVFKKKDSKDSYATEFYTRLSVNSLQGKIVGIVHPATYL
NKIVVATTNSLLVFNIKTGKLLFTSSDFNEFNITSIETVPVLDLIAFGTSDGQVVLYNIK
KGKRFRKIRTGIISKVTSVSFRTDGAPHFVASFVNGDLFFYDLEHKARVHILQTVHKEDH
GGVSKAAFLNGQPIFVTNGGDNMLKEYAFDPNLSTTNSSIVPAPHYLRSRGGHSAPPTTV
QFADPNSHFMLSASKDRSLWMFSLRKDAQAQEMSQRPPKKSANNKRIGVIPSMKDKLPEI
VCLAQSNSKEGDWENTITGHAGETIARTWDTYNRRLGRWDLPTTDGGQVKSVAISACGNF
GFVGSSSGGIGVYNMQSGIQRKLYRLHKKAVTGVAVDSMNRKMVSCGLDGIVGFYDFNES
KYLGKLQLDAPITQLVYHHSSDLVALVLDDLSIVVVDSVTQKVVRVLLGHTNRITALDFT
PNGRWIISSALDNTIRTWDLPTGSCIDGIFVPSTVTSLKMSPTGDTLATTHVNSVGIALW
TNRAMFHAVSSRHVEESEFSKIMLPNTTNDTQTTIIEGAFDENTVDDNEITGVYNTVDQI
NEKLVTLGIGPRSKFNTLLHLDVIKQRNKPTEAPKKPENVPFFLELKGEKVGDRAIESEG
KLDPNGTATQESGTEAQSQLNSLRGDNRMTFENEFTKNLRLSSETKEYAEFLKYVHSLSP
SQVDLEIRSLDITESVKEVSCFIEALTQGLENNDNFDLIQAYMSMLMKCHGDIIFDSSDE
ELKTALRGWESINESKKANMDSLVKYCSGVINFFHTV
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacctgtgaattcatcattgaagaaaagaaaatcggagaggaaagctgaggct
gtgcggccatctaagattttctctccctttcgtgtcttgggaaaggtttccaatgagatt
cctttcgccataggtaccttgggccataccttttacattgttaccagtgtggacagggct
ttccagatctacgatgcgaacactctgcatcttctgtttgtttcaaacacccaaactcct
tccaaaatcaacgccttagcggcacatttccactacgtttatgctgcatgggataacaaa
attggtatttatagacgaggaatcctagaacatgttctttcttgtgaaacagaaaatttt
attcagcagattcttgtgtttggtgactttgttatctgtaccacttttactagcaacgaa
atatttgtatttaagaagaaggattccaaagattcttatgctactgaattctacactaga
ttgagtgtaaactctttacagggaaaaatagttggaatagttcatccggctacttatttg
aacaaaatcgtcgtggctactaccaacagtttattggttttcaatatcaaaacaggaaag
ttacttttcacttccagtgatttcaatgagttcaacatcaccagtattgaaacggttcca
gtgttagatttgatagcctttggtacaagcgatggacaggttgttttatataacatcaaa
aagggaaagagattcagaaagattagaacaggcattatctccaaagttacatctgtatct
tttaggacagatggtgctcctcattttgtagccagttttgtcaatggagaccttttcttc
tatgacttggagcacaaagctagagtacacatccttcaaactgttcataaagaagaccat
ggaggtgtatcaaaagcggcttttctgaacggacaaccaatatttgtgacaaacggtgga
gacaacatgttgaaagaatacgcatttgatcctaatctatctactaccaactctagtata
gttcctgctccgcattatttgagatctagaggtggacattctgctccccccacaacagtt
caatttgcagacccaaactctcattttatgttgtctgcatcaaaagaccgttcactgtgg
atgttctccctaagaaaagatgctcaagctcaggaaatgtcccaaagacccccaaagaaa
tccgcaaataataaaagaattggtgttataccctctatgaaagataagctgcccgagatt
gtgtgtctagcacaatccaatagcaaggagggtgactgggaaaataccatcacaggacat
gctggtgagaccatagctagaacttgggacacttacaataggagacttggaaggtgggat
ttgccgactactgatggtggtcaagtgaagagtgtagccatttcagcttgtggaaacttt
ggatttgttgggtccagttctggtggcattggtgtttacaacatgcagagtggaattcaa
agaaaactttaccgtctccataagaaggcagttaccggtgttgctgttgattcgatgaac
agaaaaatggtaagttgcggcttagatggtattgttggtttttatgactttaacgaatca
aaatatttgggaaaactgcaacttgatgcgccaattacccaattagtttaccatcatagc
tcagatctggtggcattagtattagacgatttatccattgttgtcgttgactcggttacc
caaaaagttgttcgtgttcttcttggacatacaaacagaatcaccgcattggactttaca
ccaaacggcaggtggataatcagttctgctttagacaacaccatcaggacatgggatctt
ccaactggatcttgtattgatggtatttttgtgccatctacagtgacatccttgaaaatg
tctcccacaggagacacacttgcaaccactcatgtcaatagtgtaggtatcgctttgtgg
accaacagagccatgttccatgctgtatctagtagacacgttgaagaaagcgagttctct
aaaatcatgctgcccaacacgaccaatgatacacagaccaccatcattgaaggtgcattt
gatgagaacaccgttgatgataatgaaatcactggtgtctataatacagtggaccaaatt
aatgaaaaactggtgacccttggtatcggtccccgttcaaagttcaacactctgttgcat
ttggatgttatcaaacagagaaataagccaactgaagctccaaaaaaacctgagaatgtt
ccattctttttagagttaaagggtgaaaaagtgggtgacagagcaattgaatcagaaggt
aaattggatcctaatggcactgcaactcaagaatcgggcactgaagcacagtcccaactg
aattcccttagaggtgataacagaatgacttttgagaatgaatttaccaagaatttgaga
ttgagttcggaaaccaaagaatacgcggagttcctcaagtatgttcacagcttatcccct
agtcaagtcgatctagaaattcggtcattggacatcacagaatcagttaaagaggtatcg
tgcttcatagaagctctgactcaaggattagagaataatgataattttgacttaattcaa
gcctatatgtctatgttgatgaagtgccacggagatattatatttgatagttctgacgag
gagctgaaaactgccctgagaggttgggagagtatcaacgaatctaaaaaggccaatatg
gatagcttggtcaaatactgttcaggagtgataaatttttttcatactgtttag
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