Komagataella phaffii: PAS_chr1-1_0019
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Entry
PAS_chr1-1_0019 CDS
T01092
Name
(RefSeq) Component of the TREX complex required for nuclear mRNA export
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03013
Nucleocytoplasmic transport
ppa03015
mRNA surveillance pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr1-1_0019
09122 Translation
03013 Nucleocytoplasmic transport
PAS_chr1-1_0019
03015 mRNA surveillance pathway
PAS_chr1-1_0019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr1-1_0019
03041 Spliceosome [BR:
ppa03041
]
PAS_chr1-1_0019
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAS_chr1-1_0019
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PAS_chr1-1_0019
Spliceosome [BR:
ppa03041
]
Complex C
Other components
EJC/TREX
PAS_chr1-1_0019
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PAS_chr1-1_0019
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
8197536
NCBI-ProteinID:
XP_002489653
UniProt:
C4QVU9
LinkDB
All DBs
Position
1:join(572961..573189,573344..574425)
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AA seq
436 aa
AA seq
DB search
MSHEGEEELLDYSDSEEIAVAPSGTTTADKEAGEDGKEANKKGSYVGVHATGFQDFLLRP
ELTRAIRDCGFEHPSEVQQVCIPQSILGNDVLCQAKSGLGKTAVFVLSTLQQLDPSPGEV
SVLVICNTRELAYQIKNEYARFSKYMPEVKTEVFYGGTQIAKDEEILKNKDTCPHIVVAT
PGRLNALVRDKVMNVKNVKNFVIDECDKVLENLSMRRDVQSIFRETPFQKQVMMFSATLS
TEMRKICKKFMQNPLEIYVDNEAKLTLHGLQQYYIKLTEADKNRKLSELLDSLDFNQVII
FVKSVKRAEYLNRLLNENNFPSISIHSGLPQQERIERYKSFKEFNKRICVATDVLGRGID
VERINLAINYDLPNESAQYLHRVGRAGRFGTKGLAISFISSDEDNTILEQIQDRFDVKIA
EFPAEGVDASTYMSTA
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacgaaggagaagaagagcttttggattactccgattccgaagaaatcgccgtt
gctccatccggaacaaccactgctgacaaggaagctggagaagatggaaaagaagccaac
aaaaagggttcttacgttggagttcacgccaccggattccaggacttcttgttgagacca
gagttaaccagagctatcagagactgtggttttgagcatccttccgaagtccaacaggtg
tgtatccctcaatccatcctgggtaacgacgttctatgtcaagccaagtctggtttgggt
aagactgctgttttcgtattatcgactttgcagcaattggacccttctccaggcgaagta
tccgttttggttatctgtaacacaagggaactggcctaccaaattaagaatgaatatgct
cgtttctccaagtatatgcctgaggtcaaaactgaggtcttttacggaggaacccagatt
gccaaggacgaagaaattctcaaaaacaaggacacttgccctcacattgtagtagctact
cctggtagattgaacgccttagttcgagacaaggtgatgaacgtcaagaacgtcaaaaac
tttgttatcgacgagtgtgacaaggttctagagaacctgagcatgagaagagatgttcag
tctattttccgtgagactcctttccagaagcaagttatgatgttttctgctactctttca
actgagatgagaaagatctgtaaaaagttcatgcagaaccctctagaaatctatgttgac
aacgaagccaagttaactttgcacggtcttcaacagtactatatcaagctgaccgaggct
gataagaatagaaaattgagtgagctgttggattctctggacttcaaccaggtcataatc
tttgttaagagtgtcaagagagcagaatacttgaaccgtttgttaaatgagaacaatttc
ccttctatctccatccattctggtttgcctcaacaggaacgtattgaacgttacaagtcg
ttcaaagagttcaacaagcgtatttgtgttgccactgacgtcttgggtagaggtatcgat
gttgagagaattaatctggccatcaattacgatctgccaaacgaatctgctcagtatctg
cacagagttggtagagctggtagattcggtaccaagggtcttgccatttccttcatctct
tctgatgaagataacaccattttggaacaaattcaagacagattcgacgtcaagattgct
gaatttccagctgagggtgttgatgcttctacttatatgtctactgcttag
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