Komagataella phaffii: PAS_chr1-1_0143
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Entry
PAS_chr1-1_0143 CDS
T01092
Name
(RefSeq) Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease comple
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAS_chr1-1_0143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr1-1_0143
Enzymes [BR:
ppa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
PAS_chr1-1_0143
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PAS_chr1-1_0143
mRNA degradation factors
3'-5' decay
Pan complex
PAS_chr1-1_0143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
WD40_Prp19
Beta-prop_ACSF4
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
8197266
NCBI-ProteinID:
XP_002489788
UniProt:
C4QW84
LinkDB
All DBs
Position
1:complement(827139..830495)
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AA seq
1118 aa
AA seq
DB search
MEGWNEINRVPCMRPSFRISDPTRQSVPSALLFDDSHDLTWIGSEDGFVKSLADQMLTPY
TSFRCHSSKVLQLLNNKRGILSLSENSIKLTSRTGLCRMNLHDISVNHSRSMAYTSNTEN
EVLLGGFQGKLVKLNLMRGEISDTIPYDAPVYTMSANLSQICLGRVDGTVDILDPRSNDI
IASFSGHMRTLSSMDCRGNTLITTGYSVRNGTFYADPIANLYDLRTKSLMPPVTFPAGAS
FVKLHPKLPNVAILASSAGLIHFVNLYSPMNVSLYQADVGSYMNNFEVSPSGDFMGFTDS
FQNVHLWSNAPDLSSAHIPNLASSLEQATMLPPPANSDIIPADSDSTVPLSSIGMPYYDQ
PLLSNWPFDMKFSLGHVPKKINPELINSSKSVVENYNAHAFGQNNLPSGMGVNMNIPGVF
KTDTDTRIAVYSREKYGPRNVAQPYYRLHDRSNQKNKFVPKFISERLDVDEKSSSTAENT
NSDFKDTLYEQLFDCKPHSSQEVPYCFTKLDIHYSKFGVHDFDFEFFNKTNLSGLESHVQ
SAYCNSLLQLYRFAPLMFNYAVGSLAEESVDNNSLLTELGFLFDMMVKASGQHIAPSNFQ
KMLSKIPEASRILDIYNNGYNRDEHSQRVLIQSFNNFLLERISLDEMNQAKSNAPHIFNT
IMGIPVECEFIGVGCGLRKIGNTTLYSLDVRHPKTNNVVLNKKLNHSIIPYIELALSRNL
SVNMACDNCNETHAFDTLYTVKDLPPILSLNLELTNQELSELKASKTNWLASEFYASMNK
GRICLKSITTGFRHLKYELLGYVAQVTDKEGNSNLVTFVKVGKDEWFLFNDFLVMPISEH
EVLNLNYWWKKPVIVIYKNSESTNMFDYEGWRQNLNQDILYRDHFSRGTREGKIIEYELL
TKEEAPQPGTLVAIDAEFVVIEPELVEFNSDGTKKVIRPLKNSLARVSVLRGDTGPKEGI
PFIDDYVIIEEPINDYLTSWSGIEPDDLNLEKSKRSLTTLQAVYRKLWLLLNLGCIFVGH
GLINDFRTINLSVPKQQVRDTAELYFLKKEKRKLSLKFLTYAVLRREVQKGNHDSIEDAK
AALMLYRKYIQLNNTGELQHTLEEVYMEGQMLSFKVPT
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atggaaggatggaacgaaatcaatcgagttccatgcatgaggccttcttttaggatttct
gatccaacccggcaaagtgtcccttctgctttactttttgacgactcccatgacctgacc
tggattggttcagaagatggctttgtcaagtcgctggccgaccaaatgctcacgccctat
acatcatttcggtgccatagctctaaagtgctccaattgcttaataacaaaagaggaatt
ttatctctgagtgaaaattcaatcaaattgacctcgaggactggactgtgccggatgaac
ctgcacgacatctctgtgaatcattcacgttcaatggcctacacgtccaatacagaaaac
gaagttctcttgggaggatttcaaggaaagttggtgaaattgaatttgatgagaggtgag
atctcagacacgattccttatgatgcacctgtttacacaatgagtgccaacctgagtcaa
atttgtttaggtagggttgatggtaccgtggatatcttagaccctaggtccaatgatatt
atagcgagtttttctggccatatgaggacgctatccagcatggactgtagaggtaacact
ctgataacaacaggatattcagtgagaaacggtacgttctatgcagaccctatagccaat
ttgtacgacttgagaactaaaagtttgatgcccccggtgaccttcccggcaggtgcttca
tttgtcaagttacatcctaaacttccaaatgtcgccattttagcatcttcagctggctta
attcatttcgtgaatttgtattcccctatgaatgtatccctttatcaggccgatgtggga
tcttatatgaataattttgaagtatcaccctctggtgattttatgggtttcactgatagt
tttcaaaatgtacatctatggtccaatgcgccggatttatcatctgcccacataccgaac
ctcgcatcgtcattggaacaggctaccatgttaccaccacctgcaaattcggatatcatt
ccagcagattcagacagtacagttcccctgagctctattgggatgccttactatgaccag
ccgttactttcgaattggccttttgatatgaagttctctctgggacacgttcctaagaag
attaatcccgagctcatcaatagttcaaagagcgtcgttgaaaactacaatgcccatgct
ttcggccaaaacaatttaccatcaggaatgggcgtaaacatgaatatacctggtgttttc
aaaaccgatacagatacaaggattgctgtgtacagcagagagaagtatggacccaggaat
gtggcccaaccttattacaggctacatgatagaagcaatcagaaaaacaaatttgttccc
aagttcatcagtgaaagattggatgtggacgagaaaagtagcagcacggccgagaataca
aactctgatttcaaagatacattgtatgagcagctgtttgactgcaagccccattcctct
caagaagtgccatattgctttaccaaactggacattcattacagtaagtttggggtacat
gactttgattttgagtttttcaacaaaaccaacctatccggattggagtctcatgttcaa
agtgcctattgcaacagtctcttacaactttaccgatttgcaccacttatgttcaactac
gctgtaggatctttggcggaagagagtgttgataacaattccctcttaacagaactagga
tttttgtttgacatgatggtaaaagcaagcgggcaacatattgccccttctaacttccaa
aagatgctgagcaaaataccagaagctagtcggattcttgacatatataacaacggctac
aatagagatgagcacagccaaagagtgctaatacaatctttcaataattttttgttggaa
aggatttctttggatgaaatgaaccaagcaaaaagcaatgctcctcacatattcaatacc
attatgggaataccagtggagtgtgagtttattggcgttgggtgtggtttgagaaagatt
ggaaatacaactctctattctctggacgttagacatccaaagactaataatgttgttctc
aataagaaactaaatcacagtattattccctatattgagttggctctcagcagaaacttg
tctgtcaacatggcatgtgataactgtaatgagacccatgcttttgacacattgtacaca
gtgaaagatttgcctccaattttatcgttgaacttggaactcactaaccaagaactttcg
gaattgaaggcttctaaaacaaattggcttgcatcagagttctatgccagcatgaataag
ggaaggatatgcttgaaaagtataacaactgggttccgccatttgaaatatgaattgttg
ggatacgttgcgcaagtgaccgataaagaaggaaactctaaccttgtaacattcgtgaag
gtaggcaaagacgagtggtttttgttcaacgactttttggtgatgccaatttctgagcat
gaagtgttgaatttaaattattggtggaagaagcctgtcattgttatttacaagaactct
gaaagcaccaacatgtttgactatgagggctggaggcagaatttgaatcaggatattctg
tacagagatcatttcagccgtggaactagagaaggaaaaattattgagtacgaactattg
accaaagaagaggccccacaaccaggaacacttgttgctatagatgcagagtttgtcgtg
atagagccagaactggttgagtttaatagtgatggtaccaagaaagtgattcgaccactg
aagaattctcttgcaagagtttctgtattgaggggggatactggacccaaagagggaatc
ccatttattgacgattatgtcattatcgaagagcctataaacgattacctgacatcatgg
tcgggcattgaacccgatgatttgaaccttgaaaaatcgaagagaagtttaacgacgttg
caagcagtctatagaaaattgtggttgttattgaacttggggtgcatctttgtcggacat
ggtctgatcaatgattttagaaccattaatttgagtgtccccaaacaacaagtaagagac
actgccgagttgtactttttgaagaaggaaaaaaggaaattatcgttgaaatttttaaca
tatgccgtcctgagacgggaagttcaaaaaggaaaccatgattcaattgaagatgccaag
gcagcattgatgctttacagaaagtatatacagttgaataatactggagagctccaacac
actctcgaggaagtgtacatggagggacagatgttgagtttcaaagttccgacatga
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