Komagataella phaffii: PAS_chr1-1_0196
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Entry
PAS_chr1-1_0196 CDS
T01092
Name
(RefSeq) Component of the spliceosome complex involved in pre-mRNA splicing
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ppa
Komagataella phaffii
Pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr1-1_0196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr1-1_0196
03041 Spliceosome [BR:
ppa03041
]
PAS_chr1-1_0196
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PAS_chr1-1_0196
Spliceosome [BR:
ppa03041
]
Complex B
Other components
Prp19-related factors
PAS_chr1-1_0196
Complex C
PAS_chr1-1_0196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Mad3_BUB1_I
RPN7
ARM_TT21
MIT
TPR_15
Motif
Other DBs
NCBI-GeneID:
8196699
NCBI-ProteinID:
XP_002489843
UniProt:
C4QWD9
LinkDB
All DBs
Position
1:932568..934997
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AA seq
809 aa
AA seq
DB search
MEKLITYEDLAYEESLLLDPYSLESWIAYYRHKEHSSPVDQQFYVLFRAANALKRAPEIW
ILCLKTCVKLWEERKSELEEFDGLIKVFEQSLLYNGSSPIIWALYLKALVKYSCIPGITF
VRRKSDQCLQTLPFAKHHLIWPFLLQFADDVGAITSLSIWTRFYYYKKTCMPYVRLQDAS
SIEEETGFIPDQYKLENVTYQTILHKLTSQAHSDLSAYTRTFQDLLDNTEFLATVELSEL
KLYTDYLNVLIKHPQESENIDYKSHDTKIEKLVQYLIEKFPDQQASMIIHWTQYWINRGN
FHKVREIFEVGITKSKTVKDFVVVYDTYLEFEETVISTTLKDLELQGLETSPMLELRMHS
FEQLMDRRELLMNDVLLRQDKNDVATWLDRVAIFDKETQLQNVLATYVEAIRTIDPGTIE
EPGVLPKLWLGYIDVYKSKGDLKTARKIYAATLKANFPFPEDLADLVISWAEMELENDDY
PQAIDVMKTSLKEFALKKSTKLWSFYLDLVESSGNIPDTIKLYDTVIDLKIATPLTILNY
CNFLEEHQRYQECLRCYEKGVHLFRFPVSFEIWNVYLSKMVNEQAKFKLTNEHIRDLFEQ
CIEQCPLNLVEPIYIGYAKFELDHGFISKAFRIYEQAIEKLEDEKEKYNIFKIYIQVSLL
NQEDQKTRKIYEQALESLPATLYGFTESIVIPFVELEIKLKEISRARAIFHYAADLIVPT
KKNPILWERWERFELHYGNEDTFKSMLRYQRSIDDQAKLEDVETLVESNAPVQFVASSTG
PQVGSATTNNMEKKINPDAIDLEFDDLSD
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggagaagctgattacttatgaagacctggcttacgaggagtcattgctgctagatcca
tactcattggagtcctggattgcttattatcgtcacaaggagcactcgtcccctgtagat
caacagttctacgtactgttcagagctgctaacgctttgaaaagagcacctgaaatttgg
atcctgtgtctgaaaacctgtgtgaagctttgggaggagcgaaagtctgaattggaggag
tttgacggtttaatcaaagtgttcgaacaatctttactttacaatgggtcttctcccata
atctgggctttgtacttgaaggcactagtcaaatactcatgtatccctgggataaccttt
gttagacggaaatctgaccagtgtttacaaacacttccttttgcaaaacatcatttgata
tggccttttctcctgcaatttgctgacgatgttggagccatcacctccttgtcgatttgg
acaagattttactattataagaaaacatgcatgccttatgtgaggctccaggatgcttcg
tcaattgaagaagaaaccggatttattcctgatcagtacaaattggagaacgttacttac
cagactatacttcataaactaaccagtcaagcgcattcagacttatcagcatacacaaga
acttttcaagatttgctggataatacggagtttctggcaacagtagagctctccgaattg
aagttgtatacagactatcttaatgtgctaataaagcatccccaagaatcagagaacatt
gattacaagtcgcatgacacgaagatcgaaaaactggttcaatacctaattgaaaagttt
cctgaccaacaagcatccatgataatacattggactcaatactggataaacagaggaaat
ttccataaagtaagggaaatctttgaagtcgggataaccaaatcaaagacggtgaaggat
tttgttgtggtctacgacacatacttagagttcgaagaaactgttatctccactactttg
aaagatttagagcttcaagggctggagacttcaccaatgttggaattgaggatgcatagc
ttcgaacaactaatggacagaagagagttattaatgaacgacgttctgttgagacaggac
aagaatgatgttgcaacttggttagatagagttgcgatttttgataaagagacacaatta
caaaacgttttagccacttatgttgaagcaattagaactattgatcctggcaccatcgaa
gaacctggagtgttgcccaaactttggttaggatacattgatgtatacaaatcgaagggt
gatttgaaaacagcccggaaaatatacgctgctactttgaaggcgaactttccttttcca
gaagatttggcagatcttgtcatttcctgggctgaaatggaattggagaatgatgactat
cctcaggctatagatgtgatgaaaacctcactaaaagaattcgcattgaaaaaatctacc
aaattatggtcattttatctggatttggtagagtcgtcaggcaatattcctgatacaatc
aaattgtatgatacagtgattgacctaaaaatagccactcccttaacaattctaaactat
tgtaattttttggaagaacaccaacgatatcaggagtgcttaagatgttacgagaaaggt
gtacatttgtttcgtttccctgtttccttcgagatttggaatgtctatctttccaaaatg
gtcaacgagcaggcaaagttcaagctcacaaacgaacatatcagggatttgtttgaacaa
tgtattgaacaatgtcctctgaatcttgtagagccaatatatattgggtacgcaaagttt
gaactcgatcatggttttatcagtaaagcttttagaatctacgagcaagctatagaaaag
ttggaagacgaaaaggagaaatataatattttcaagatatacatacaagtgtctttgctg
aaccaagaggatcagaaaactcgaaagatttacgaacaagctctcgagtcactacctgct
acattatatggattcactgaatcaattgttattcccttcgttgagttggaaattaagctc
aaagaaatctcacgagcaagggccatatttcattatgctgcggatcttattgtccccact
aagaagaatcccatcttatgggaacgttgggaacgttttgaattgcattatggtaatgaa
gacacattcaaatcaatgctgcggtatcagagatcaattgacgaccaagctaaactagaa
gatgtcgagaccttagtcgagtccaacgctcccgtacagtttgtcgcatcgtctacggga
ccccaagtaggttctgctaccactaataatatggagaagaagataaacccagatgccatc
gatctggaatttgatgatctaagtgattaa
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