KEGG   Komagataella phaffii: PAS_chr1-1_0206
Entry
PAS_chr1-1_0206   CDS       T01092                                 
Name
(RefSeq) Subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lys 4
  KO
K14962  COMPASS component SWD2
Organism
ppa  Komagataella phaffii
Pathway
ppa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    PAS_chr1-1_0206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppa03019]
    PAS_chr1-1_0206
   03036 Chromosome and associated proteins [BR:ppa03036]
    PAS_chr1-1_0206
Messenger RNA biogenesis [BR:ppa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     PAS_chr1-1_0206
Chromosome and associated proteins [BR:ppa03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     PAS_chr1-1_0206
    COMPASS/SET1 complex (yeast)
     PAS_chr1-1_0206
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_Prp19 WD40_WDHD1_1st Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WDR55 EIF3I Beta-prop_EML_2 ANAPC4_WD40 Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd WD40_Gbeta PAC11 Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_TEP1_2nd Beta-prop_SPT8 Beta-prop_NOL10_N Beta-prop_VPS8 NBCH_WD40 Beta-prop_EML Beta-prop_NUP159_NUP214 Beta-prop_Aladin Beta-prop_WDR35_TULP_N WD_LRWD1 CFAP251_N EH YdeJ PSP1
Other DBs
NCBI-GeneID: 8196709
NCBI-ProteinID: XP_002489855
UniProt: C4QWF1
LinkDB
Position
1:join(955547..955550,955564..956540)
AA seq 326 aa
MTQKFCRLSNRTKNFTTKDSPQITSLDFDDSGQFLLTSSIDESIQLYDINKGKHLKPIYS
KKYGAHLARFSHDEKHCVYASTKVEHTIRFLSLQNNTYIRYFKGHQGLVNSLELSPLESI
FMSSSLDNTVKLWDLRSPNAQGNLNVKGPNLIAFDPSGLVFAIVNEETKKLGLYNIKNYE
QAPFSTFELPQDYLPLKLSKVEFTNDGSKIIVTFGKGQLVVVDAFEGTILGKLLDSVSLP
ERPYIDSGSSTLTPDGKFLLNGNGDGTVKLYDLSKITDESVNAPISPISSLSTDHGLPRI
TLFNPRFWCFASADTSLTLWTPSFDK
NT seq 981 nt   +upstreamnt  +downstreamnt
atgactcaaaagttctgcagactttccaaccgtacaaaaaattttacgacgaaggacagt
cctcaaataacgtccctagactttgatgactcgggtcaatttcttctcacgtcctccatc
gacgaatcaatccaattgtatgacattaataaaggaaagcatctcaaaccaatctactca
aaaaaatacggggcccatttagcccggtttagtcacgacgaaaagcactgtgtgtatgcg
tccactaaagttgaacacacaatccgtttcctctccctgcagaacaacacatacattaga
tatttcaaaggccaccaaggtttggtaaacagtctggaattatcacccttagagtcaatt
ttcatgagttcaagtttggataacacagtcaagctatgggatttgcgttcaccaaatgcc
caagggaacttgaacgtgaagggacccaacttgatagcttttgacccttcgggcttggtc
tttgccatagtcaatgaagaaacgaaaaaactgggtctttacaacataaagaattacgag
caagctccattttcaacatttgaactcccccaagattatctgccgttaaaattgagcaaa
gtagagtttactaacgatgggtctaaaattattgtgacttttggcaaaggtcaactagta
gttgtggacgcattcgaaggtactatactcgggaaattattggattcagtgtctctgcct
gaacgtccatatattgatagtggatcttccacgttaaccccagacggaaagtttcttctg
aatggtaacggagatggtactgtgaaactctatgacctctctaagattaccgatgaatcc
gtaaatgcgcccatttctccgatttcttctctgagtacagaccatggattaccccgaatc
accttattcaacccaagattttggtgttttgcctcagctgacacttccctaaccctttgg
acaccttcttttgataaatga

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