Komagataella phaffii: PAS_chr1-1_0416
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Entry
PAS_chr1-1_0416 CDS
T01092
Name
(RefSeq) Pre-mRNA splicing factor
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ppa
Komagataella phaffii
Pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr1-1_0416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppa03041
]
PAS_chr1-1_0416
Spliceosome [BR:
ppa03041
]
Complex B
Other components
Prp19-related factors
PAS_chr1-1_0416
Complex C
PAS_chr1-1_0416
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CRD
RRM_1
FYVE
Motif
Other DBs
NCBI-GeneID:
8196546
NCBI-ProteinID:
XP_002490074
UniProt:
C4QX20
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All DBs
Position
1:1331237..1332274
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AA seq
345 aa
AA seq
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MSDLPATCNNCLGENPYIEMIQEKDGRECKICTRAFTSFLWYPKIGTSIFRRTDICLTCA
RARNACQSCLLDLKFEINPDMRDEILGTNKHLMEFSPSTIAANNSKISKIYKANQLERNF
QDEDSGNLPRHISPEPKVPQILETAEETVLRLTSSNVSQKALSSTSKSNDRKHLSTKELL
KLLNKLPFNGDLTIPDDPDIKSMFLFGITDELSNFRVQEYFKEQFNSTLEATILNHRARC
GFVVFESRNSAEAVAESILAGKLPEGPSLIVIDRVPLRVAWGRVCNLGLNNKDQARLAQL
VKKQLSILCKNTQIPKSSNKITPTNPVTTTVSNPFAKLTFSGNEL
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatttaccagcaacctgcaataattgcttgggtgagaatccctacatcgaaatg
atccaggaaaaagatggtcgtgaatgcaaaatatgtactcgagcctttaccagttttctt
tggtacccgaagattggcacttcaattttcaggcgaactgatatctgtttaacttgtgca
agagcccgaaatgcctgccaatcttgtttactagacttgaaattcgaaatcaatcctgac
atgagggatgagattcttggaactaacaaacacctaatggaattttcgccttccactata
gcagctaacaatagcaaaatttcaaaaatctataaagctaaccagctggaacggaatttt
caggatgaagattctggaaatctgccgagacatatttcaccagaaccaaaggttccacaa
atacttgaaacagctgaagagactgttctaaggttgactagttcaaatgtctctcaaaaa
gcgctttcatctaccagcaagagtaatgacagaaaacatctgtcgacgaaagaattgttg
aagcttttaaataagcttccttttaacggagatttgactatcccagatgatcctgatata
aagtctatgtttctgtttggaataacagatgaactgtctaattttagagtgcaagaatac
ttcaaagaacaatttaattccacattagaggcaacaattttaaatcaccgtgctcggtgt
ggatttgttgtattcgagagtcgtaattctgcagaggccgttgcagaatctatactagct
ggcaaacttcctgaaggccctagcttgattgtaattgatagagttccactccgagtcgct
tggggaagagtctgcaacctcgggctgaataataaggatcaggcaaggctggctcaattg
gtaaagaagcagttgtcgattctttgtaagaacactcaaattcccaagtcatcgaacaaa
attacccccacgaatccggtgactacgacagtgtcaaatccctttgctaagctcactttt
tctggtaacgagctataa
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