Komagataella phaffii: PAS_chr1-3_0022
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Entry
PAS_chr1-3_0022 CDS
T01092
Name
(RefSeq) Transportin, cytosolic karyopherin beta 2
KO
K18752
transportin-1
Organism
ppa
Komagataella phaffii
Pathway
ppa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PAS_chr1-3_0022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr1-3_0022
03009 Ribosome biogenesis [BR:
ppa03009
]
PAS_chr1-3_0022
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
PAS_chr1-3_0022
Ribosome biogenesis [BR:
ppa03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
PAS_chr1-3_0022
Pre-60S particles
PAS_chr1-3_0022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
TOR1L1_N
HEAT_2
Vac14_Fab1_bd
HEAT_EF3_N
IBN_N
Cnd1
SDA1_HEAT
RNA_pol_Rpc4
Motif
Other DBs
NCBI-GeneID:
8197955
NCBI-ProteinID:
XP_002489358
UniProt:
C4QV04
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All DBs
Position
1:39526..42300
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AA seq
924 aa
AA seq
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MSYWTPDPQAVEQLQLILNGTVSGSQSIIAEATEALTQARQQPDFENYLLHILLSNNGTD
SQIRASAGLTLKNSIMLKEFAEKPDSVKHHILNEILKGLVDSDSLVRNITGNVVTSLFSL
FGVKGWPQVLVQLLDLASSEGQEKAQEGAINALAKICEDSSVDLDKSYNGETPSEFIVPR
LLQLMNSPIPRVRAKSVTCINLFLLIKSSAIMSRLDEYMQKLFVLATDQDGSVRRSICTA
FVDILDADQIKLQPHLDGVINYCLHSVNDQDEEVALEACEFLLGLSTSLLDESLLVKKLP
QIIPTLLSKMAYSELDIFLIENQDAKDDATEADRDEDIKPQMAKSKNSNRATSSKKERDT
SQLEDNNDSEDDSDDDDGSDLSEWNLRKCAAATLDVLATNFPQEVLDIVFPIVRERIMSP
EWPVVEASLLALGAIADGCIDLAKPQLPELIPFFVEKLKAPQPRVRQITCWTLGRYAQWV
CTEAGSGGRYGAYFLPTFQAIMTCALDNKKVVQESACSSLANFVEATDQSMITPLVEPLL
YHFQQCFKTYQRKNLIILYDAVQTFVEKAGEMIQANEGYISLLLPPLIEKWQQFSDDDQD
LWPLLECMSTVAASLGESFAQYAVPVYERAINILQTCVEQDQRCQTSELITPPEKDFIVT
SIDLIDGLVQGLTTHSAELIKQFNSNERNLMHLLLICFEDSFDDVRQSAFALLGDLSIFL
LNDIVKPYLHQVMICIDNEIKHRNYNSNAVCNNATWALGEISMRLSKEEITPYLPSFVSL
LIPLLEASDMQSTVLENAAITIGRMGISSNEALAPYANDFINQWCKLMLYLEENEEKETS
FIGMCRILSVDPRNLVISNRQAGLAGLTNFLRCVLYYESPSEELYRMFFTLLNGFSAYFG
SEWNVIVSALDQQERDLLQARYNV
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgtcatattggacccccgatccacaggctgtcgaacagcttcagttgatattgaatggg
actgtttctggttctcaaagtatcattgcagaggctaccgaggccctgacgcaagcgcgt
caacaacccgactttgagaattatctactgcacatactcctaagcaataatggcacagac
tctcagattagggcatcggctgggctaaccctaaagaatagtatcatgctcaaagaattt
gccgaaaagccagatagtgttaaacaccacattttgaatgagatactcaagggtctagtg
gatagtgactctttagtgagaaacattactggtaatgttgtcacatctctattttccctg
ttcggagtcaaaggctggccacaagtccttgtccagctgctagatcttgcctctagtgag
ggacaagaaaaagctcaagagggagccattaacgctttagccaagatctgcgaggattcc
tcggtggatctagacaaaagctacaatggtgagacaccttccgagtttatagttcctagg
ctattacagctcatgaactctccaattccacgcgttagggccaaaagtgtcacttgtatt
aatctctttttattgattaaaagttctgctatcatgagtcgcttggatgaatacatgcag
aaattgtttgttttagctactgaccaggatggcagtgttagaagaagtatctgtactgct
ttcgtggacatcttagacgcagatcagataaaacttcagcctcacttggacggcgtaata
aactactgtctacactctgtaaatgatcaggatgaagaagtagccctggaagcttgtgaa
tttcttctcggcctctccacttcgttgttggatgaatccttgttggttaaaaagttacca
cagattatccccactctgcttagcaagatggcatactcagaattagatatctttttgatt
gagaatcaagatgcaaaagatgatgccactgaagctgatagagatgaagatatcaagcca
cagatggccaaaagtaaaaacagcaaccgtgctacttcttcgaaaaaggagagagatacc
agccagttagaagacaacaatgattctgaggacgacagtgatgacgatgatggatcagat
ctatctgagtggaacctcagaaagtgtgctgctgctacacttgatgtactggccaccaac
ttcccccaagaggtgttagatattgttttccctattgtcagggagcgtataatgtctccg
gaatggcctgtcgttgaggcttcgttgcttgctttaggtgccattgcagacggttgtatt
gaccttgcaaaacctcaattacctgaattaataccatttttcgttgagaagttgaaggct
ccgcaaccccgtgtccgtcagattacttgctggactcttggaagatatgcccaatgggtt
tgtactgaggctggatctggaggaagatatggagcttactttttgcccaccttccaagct
ataatgacttgtgctcttgataataaaaaggttgttcaggaaagtgcttgttcgtccttg
gccaattttgttgaagctacagaccaatcaatgattacgccactagttgagcctcttttg
taccacttccagcaatgtttcaagacttaccagaggaaaaatttgatcatcctctatgat
gctgtgcaaacttttgtggagaaggcaggtgaaatgattcaggcaaacgaaggctatatc
agtttacttcttcctcctcttattgaaaaatggcaacaattcagcgatgatgaccaagac
ctatggccattgttagagtgtatgtccacagttgctgcgtctttaggagaatcatttgct
cagtatgctgttcctgtgtacgagagagctatcaacatattgcaaacctgtgttgaacaa
gaccaaagatgtcagactagtgagctgataactccgccagagaaagattttatagtcaca
tccatcgatttgattgacggtttggttcagggattgactactcatagtgctgagctcatt
aagcagttcaatagcaacgaaaggaacttgatgcatttgctgctgatctgttttgaggat
tcttttgacgacgtccgtcaatccgcatttgcactgcttggagacttgtctatttttttg
ctgaatgacatagtcaaaccatacttgcatcaagtcatgatctgcattgacaatgaaatc
aaacaccgtaactacaacagtaacgctgtttgtaataatgccacttgggctttgggtgaa
atttctatgcgactttccaaggaggaaataacgccatatcttcctagttttgtctcgctg
ttgattccactcttagaagcttcagatatgcagagtactgtccttgaaaatgctgcaatt
accatcggccgcatgggaatctcttccaacgaagctcttgctccctatgctaatgatttc
atcaatcaatggtgtaaacttatgctatacttggaggagaacgaagaaaaagaaacatct
tttattggaatgtgcaggatattatcagttgatcccaggaacttggtcatatcgaataga
caggccggattagcaggactcactaattttctccgctgtgtgttatactacgaatctcct
agtgaagaactctatagaatgtttttcactttgttgaatggattcagcgcttacttcggt
tctgaatggaacgtgatagtgtctgctttagaccagcaagagagagatttgcttcaggca
cggtacaacgtttaa
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