Komagataella phaffii: PAS_chr1-3_0071
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Entry
PAS_chr1-3_0071 CDS
T01092
Name
(RefSeq) Subunit of the nuclear pore complex (NPC)
KO
K14311
nuclear pore complex protein Nup188
Organism
ppa
Komagataella phaffii
Pathway
ppa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PAS_chr1-3_0071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr1-3_0071
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
PAS_chr1-3_0071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_C
Motif
Other DBs
NCBI-GeneID:
8197381
NCBI-ProteinID:
XP_002489407
UniProt:
C4QV53
LinkDB
All DBs
Position
1:132095..136741
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AA seq
1548 aa
AA seq
DB search
MADDKDSWTFAQAFELFSKSNDASILDSLDTFLKTNSDLLESKSIPFVFHEFKDDELLHL
KENVIRGVQYPVPNEKIIKYCITVSRLLNVDVHEVLRICKQNFVDLVIDRNDSITEIIKL
VTQEIALIIQLRCLLLQSKRLTINSDDIFDGIFDYLNEYFIKKGYFEEESPYASLIANEK
VNVTVQVLNFLAYLSTEYSATKEQVVTWFKIMELSRFASILKRSISNSRLESIQSLLSVI
TNLILDLNNNYGGLDHYKSYLNDAVSIQQISESLNNTSPSCPIVLYSWSILLHRKYLVLE
SFPDNPHGQKLLGSLGGLHQLQQQYLQFSKISQDQNVIEKLVRCHKNLYYDAIFTTALGT
LVLHYLPYLSLTDQVSQMLNTIFKDCLRNILIKLFQDEYFERLLTLARAKFPRSIVSYLN
LASLNTNFALEEVTCMKSYMESFDEDSLLNKYEIDDQNPELVKITQDIDIFPPFESSKEL
SLLMRDGTKGKLLSGNMVVFIYDYNGWTFLGRILQNISRNFNLQDDRVASMISILQVFTR
VTEEIVPESAESFFALASTFVDDSDVIEVIFRLFDQCLHARCLQGLEAIAKFIQALCRTL
SYRVWSYLSHSQLFSVFASTILGAVEMVSGDYSFTITLIKMVDTLVVGCLSLDTRVSARL
KSQVLINITSHMLHIFEIFYHCRFEIEYQKWEIGTLLVDVFGKLLVPVYGIDGVDEPENK
ATAVFAKSAQKIVDSFLVPDLMDVRSNKPITKAIDDLLTKSSTLDLTGVWYSNWNRAIIG
FTELLLSIRSVCGMPPSILEKTMFAKSPSLVDVYHHHTSLRLDVTKLLTSLVNAKWPNEP
PSLLAYLGKDQSYLLLNLLAANLTNSLVDYDIKVSIYDLFSAVMEGDQEGLSIMFITGHG
SNEKFQQASISLLEIMKKCVIDLSQYPDSVALHLVDAIALAFNSWTTAKESKDDEPFIGQ
LITRISKRNLIDTPQTNQEFINACYEHRLISKIAEILSLFLFVSNNEKCKRMIVQLIESD
EFLETIEADFRIEGYKSSLHNDLHEKFQQNWPGMKLDQFAHSSLVKRKRYGENSVFALGL
LDDLFESDERWADFRNEIIQASINLQYISAQLLVAKSLSALITTYFKKATAVDIKFIKLA
TQLLLINDRDGIPAPIFKEPYYERIDLAFFIVYNFSKTTKQVDDKYLADLISAVSQLIIS
PTDLYRPLLRILYACLKLIKKDTNLFAEHFTIFERVFDLVVCQNTRYLFASLTSDQNLPL
FGKLVENILLNLALLKTFFNMNLPKNLANSFAKPLVRHGTLRSILNLYSSSHSLNEKDNL
ILADIAITFIHELVTVKGVTKELISNRLFSNLIESPVSLYIQNGHITATSTPRLHNIWSN
GLLSIILSILGSFGESVLPEVCSFVTCFAKQIATCIHSWSSDSLSVSLPLIQETSQLIML
YSLLKALNFKDYMISNNLTFDSGVKQIMSSSSRSRYSNDSEQLQNRFFPGLDTLEQRNAL
GATLSYLLSHPKYLMSRAVDTNLIENKSSQFQEELINGLKELRNSLKD
NT seq
4647 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgataaggattcctggacctttgcacaagcttttgagttgttcagcaagtcc
aatgatgccagcattttagattcgttggacacttttttgaaaacgaattctgatttactg
gagagcaaatctatcccctttgtctttcatgagttcaaggatgatgagttactccactta
aaggagaatgttattagaggagttcaatacccagtccccaatgaaaaaattataaaatac
tgtattacagtgagcaggctgctaaacgttgacgttcatgaggttttaagaatctgtaaa
cagaactttgtcgacttggttattgacagaaatgattcaataacagagataatcaagttg
gttactcaagaaattgcattgattatacagctaaggtgtttactactacaatcaaaaagg
ctgacgataaacagtgatgacatatttgatggaatatttgactatctcaacgagtatttc
atcaagaagggatattttgaagaagaatctccgtatgcatccttgatcgctaatgagaag
gtcaatgtgactgttcaagtattgaacttcctggcgtatctatctactgaatattcagcc
acaaaagaacaggttgtaacatggttcaagattatggagctgtctcgatttgcatccatc
ttgaaacgttccataagcaacagtcgtttagagtccattcaatcattattatcagttatt
acaaacttaatcctagacctgaataacaattatggtggcctagatcattacaagtcctac
ctcaacgatgccgtgtccattcagcagatcagtgaatcactgaacaacacttctccaagt
tgtcctattgtcttatacagctggagtattcttttgcacaggaagtatttggtactggaa
tcttttcctgacaacccccatggccagaagttgttaggttcattggggggattgcatcag
ctgcaacaacagtatcttcaatttagcaagatttcacaagaccaaaatgttattgaaaaa
ctggttcgttgccacaagaatctttattatgatgctattttcacgactgctctgggaact
ctggtccttcactatttgccatatttatcactcactgatcaagtttctcagatgttaaac
acaatattcaaagattgcctcagaaacattctaatcaagcttttccaagacgagtatttt
gaaagattgctgaccctagcaagagccaaatttccaagatcaatagtttcctacttaaac
ttggcatcattaaatacaaattttgcattggaagaagtcacttgcatgaaatcttatatg
gagtcctttgatgaagattcgttgttgaacaagtatgaaattgatgatcagaatcctgag
ttagtgaagataacacaagatattgatatttttccacccttcgaatcatccaaggaattg
tcacttttgatgagagacggaaccaagggaaagttactcagtggtaatatggttgttttt
atttacgattataacggctggaccttcttaggtcggattctacaaaacatctctcgtaat
ttcaatttgcaagatgatagggttgcctctatgatatcgattctgcaagtgttcactcga
gtcacagaggagattgttccagaaagtgctgaaagtttttttgcactggcaagcactttt
gtagacgattccgatgtcattgaagtaattttcaggttgttcgaccaatgtttgcatgca
agatgtctacaaggtttggaagctattgccaagtttatccaggctctttgcagaaccttg
tcctatcgtgtatggtcatacctatctcattctcaattgttcagcgtatttgcttcaaca
attctgggagctgttgagatggtttcaggtgactactcttttaccattactttaatcaaa
atggtggatactttggttgtgggatgcttgagcttggatactagagtttcagcaagacta
aagagtcaagttttgatcaacataacctctcatatgcttcacatctttgagatcttctac
cattgtcgctttgagattgaataccaaaagtgggagattggtactttgctcgtggatgtc
tttggaaagttgctggtgcccgtctatggtattgacggtgtcgatgagccagaaaataag
gccaccgccgtattcgccaaatctgctcagaaaatagtggattcttttttagtgcctgat
ttaatggatgtcagaagcaacaagccgattaccaaggctattgatgatttactaacgaaa
tcatcaactctcgatcttacaggggtttggtattctaactggaatagagctatcatagga
tttactgaacttttactttcaatcagatcagtatgtggaatgcctccttccatactagaa
aagactatgtttgccaagtcaccatctttagtcgatgtttaccatcatcacacaagctta
agattagatgtcacaaagcttttaacgagtttggtaaatgcaaaatggcccaacgaacct
ccttcattgctagcatacttgggtaaagatcaatcatatcttttgttaaaccttttggct
gccaatttgacaaactctctggttgattatgatatcaaagtgagtatatatgatcttttt
tctgccgtaatggagggtgatcaagaaggtctatcaattatgtttatcacaggccatggc
agcaatgaaaagttccagcaagcctctatttccctcctggaaattatgaaaaagtgtgtg
attgatttatctcagtacccagattcggtagctcttcacttagtggatgcaatcgctttg
gctttcaactcctggacaacagctaaagagtccaaagatgatgagcctttcattgggcag
ctaataactagaatttccaaaagaaacctcattgatactccccaaaccaaccaagagttt
atcaatgcttgctatgagcatcgcttaatctcaaagattgccgaaatactgtccttgttt
ttgttcgtctctaataatgaaaaatgtaagaggatgatagttcagcttatcgaaagcgac
gaattcttggaaactattgaagcagattttcgcattgaaggctataagtcatcgctgcat
aacgatttgcatgaaaaatttcaacagaattggcctggaatgaaactcgatcagtttgca
cattcatcactggttaagagaaagagatatggtgagaactctgtatttgctcttggcttg
ctagatgacttatttgagagtgatgaacgatgggcagattttagaaacgagatcattcag
gccagtatcaatctgcaatacatctctgcacagctacttgttgctaaatcactatctgca
ctgattactacgtacttcaaaaaggcaacggcagtggatatcaaattcattaaactggca
acgcagttactgcttattaatgatcgtgatggaattccagcacccatattcaaagaacca
tattacgaacgaattgatttggccttttttatcgtgtacaatttttcaaaaactaccaag
caagtggacgacaaatatttagccgatctcatctctgcggtttcgcaactaataatctct
ccaaccgatttgtacagacctctattgcgaattttatatgcctgtttgaagttgatcaag
aaagatacgaatctttttgcagagcatttcacaatatttgagcgagtatttgatctagtc
gtctgtcagaacactagatatcttttcgcttctttgacatctgatcaaaatcttcctttg
tttggaaaactggttgagaatatccttttgaaccttgcgttactgaaaacgtttttcaat
atgaatttgccaaagaacttggcaaactcctttgcaaaaccattggttagacatggcaca
ctgcgctcaattttgaatctgtattcttcatcccattcattgaatgaaaaggacaattta
atattggcagatatagctatcactttcatccatgagttggtgacagtcaagggagttacc
aaagaactaatttcaaaccggttgttttctaacttaatagaaagccccgtttctctttat
atccagaacggacatattacagccacaagtaccccaagactgcataatatttggagcaat
ggtctattgtcaataatactatccattttgggatcgttcggggaatctgtactacctgaa
gtgtgcagttttgttacgtgtttcgcaaaacagatagctacctgtatccacagttggtca
tcagactcgctatcagtatcgttacccctgattcaagagacaagtcaactaattatgttg
tatagccttctcaaggccttaaacttcaaagattatatgatctcaaacaatcttactttt
gattcaggagttaaacagataatgtcctcatcatcaaggtcaaggtactcaaatgattct
gaacaacttcagaaccggttctttccaggtttagatacattagagcaacgaaatgctctt
ggtgctactttaagttacctattatcacatccaaagtatctcatgtccagagctgtagat
acaaatctcatagaaaataaatctagtcagtttcaggaagagctgattaacggtttgaaa
gagttaagaaactctttaaaggattaa
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