Komagataella phaffii: PAS_chr1-3_0072
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Entry
PAS_chr1-3_0072 CDS
T01092
Name
(RefSeq) Splicing factor that reanneals U4 and U6 snRNPs during spliceosome recycling
KO
K22611
spliceosome associated factor 3, U4/U6 recycling protein
Organism
ppa
Komagataella phaffii
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppa03041
]
PAS_chr1-3_0072
03036 Chromosome and associated proteins [BR:
ppa03036
]
PAS_chr1-3_0072
Spliceosome [BR:
ppa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
PAS_chr1-3_0072
Chromosome and associated proteins [BR:
ppa03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
PAS_chr1-3_0072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
HAT_PRP39_C
RRM_10
RRM_PARP14_3
TPR_14
PRP6_TPR
RBD_DEAH11
Smg4_UPF3
RRM_2
Prion_bPrPp
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-GeneID:
8197382
NCBI-ProteinID:
XP_002489408
UniProt:
C4QV54
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All DBs
Position
1:complement(136764..139361)
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AA seq
865 aa
AA seq
DB search
MEQNTIIPRGEYLQLIENAKGDEPESVLDLRLKFLSIYKFTTQEWNSWLQEMQTENFETV
DFYFQLRLKDDSSPSVWLKYIELASNYSTLEEKVTEIFNKALISTQYHYTESQIIWSSYW
KFMSEQQNVGADVLDSIYLQRLQIPHFDSQETFNHYSVFVTNNFKEAYDSKMKYASKLFN
QSKAISDRLEDFELKLLDAQFQPTSKFWIGYIDSVFRLKKFQHARLLAKSIFERATTNRF
DVLAIDIWSHYFNVLNEKDIALHPSSVESFIRQFPEHPTPYQYYFSLTLDARSLLKFRSQ
AFQFDIFTPSKFLEWKNTACSLLWTELDVLLNSDSSSIPILQDLSMFSELALQNDDVLHS
LDRSCVEIYSLLDLLDEARALLRKMTEKFPSQVEIWLFSYQFERSHDNLTTASKILRAGI
SRWDQLDWPQRLMDEQSRFEGIYNHKDLAKAFAKSSRKLQESSEPMASPSIQSELELENN
EEKSGPPKRALEESIYTPSKKSKRDRENLSVLVTSGNKLEELSVRNLFQDCGEIKSVFLR
NNLATIEFSTEDGYLAALTKDHKTIDGFEISVNKLLSSTVWVTNFPPDQLSQSLEDLFSE
VGTVLNTRFPSLRFNTDRRFCYIQFTSEQAAMDAVAKFNGKVLKDSQGKEYHLVAKISNP
EKRSQRSDEGRELFIRNLDFKLTKEDLVPLFEKYGQIDKIYVPCDSETKKNNGFAFITFK
EKDAAESALELNSVPLLDRPLDVSLAKKKPKKVSVLEMNPAPKKNSKLTTIEAFDLPETV
NSSQLMKIFSAIGPISKITLKPESHSAFIAYEDVNNSGRAMLVLNGKQVDGFTLKLSEKS
TQQQPRKPSQFPTSFIPPSLQRRKV
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacacgataatacccagaggagaataccttcaattgatagaaaatgccaaa
ggtgatgagcccgaaagtgtcctagatctacgactcaaatttctttcaatttacaaattt
accacacaggaatggaacagttggttacaggaaatgcaaaccgaaaattttgagaccgta
gacttctactttcaattaaggctgaaagatgatagttctccttctgtttggctcaagtac
atagaactagcatctaactattcaacattggaagaaaaagtcacagaaatattcaacaaa
gcgctaatcagcacccaatatcattacacagaaagtcaaattatatggagcagctactgg
aagttcatgtctgaacagcagaatgttggtgctgatgttttagactctatttatttacaa
cgacttcaaattcctcattttgattctcaagaaacattcaatcattattcagtctttgtc
accaataacttcaaggaggcctacgattctaaaatgaaatacgcttctaaattgtttaac
cagtcaaaggcaatttcagatcgtttggaagactttgagctgaaacttttggatgctcag
ttccaaccaacatctaaattctggattgggtacattgacagtgtgttcagattgaaaaag
ttccagcatgcccgattgttggcaaaatcaatatttgaacgagcaacaactaatagattt
gatgttttggccattgacatatggagccactatttcaatgtcctgaatgagaaagatatt
gccttgcatccttcttcagtggaatcatttataaggcaatttccggaacatccgactcct
taccaatactattttagtttaactttagatgctcgttcacttttgaagttcagatcacaa
gcctttcagtttgacatcttcaccccctccaagttcttggaatggaaaaacactgcgtgc
tcacttctgtggactgaactagatgtattgctaaattctgattccagctctatacccatt
ttacaagacctatctatgttttcagaacttgcactgcaaaatgatgacgtcctccactcc
cttgatcgaagttgtgtcgagatctattcgcttctggatttattagacgaagcaagagcg
ttattgcgcaagatgactgaaaaattcccttctcaagttgagatatggctattttcttat
cagtttgaacgatcccatgacaacttgactactgcctcaaaaatccttcgtgctggaata
agtagatgggatcaacttgattggccacagagattaatggatgaacagtctcgcttcgaa
ggtatatacaaccacaaggatctggctaaagcgtttgcaaaatcaagccgaaagttacaa
gagtcatccgagcctatggcttctcccagcatacaatctgaacttgaattagagaataat
gaagaaaagagtgggccaccaaaacgagctctggaagaatctatttatacaccatcaaag
aaatctaaaagagatagagagaatttatccgttttagtcacatccggaaacaaactagaa
gagctgtctgtacgaaacttatttcaagattgtggagaaattaaatccgtttttctgaga
aataacttagctactatagaattcagcacagaggatggctacctagcagctttgaccaaa
gatcataaaacaatagatggttttgaaatctctgtgaataaactactcagttccacagtt
tgggtaaccaatttccctccagatcaactctctcagtcccttgaagaccttttctccgaa
gtgggtactgtgctaaacacacgattcccttccttgaggttcaatacagatagaaggttc
tgctatatacagtttacgtcagaacaggcagcgatggatgctgtagccaagtttaatggt
aaagtacttaaggattcgcagggaaaagaataccatctggtggccaaaatatcaaaccca
gaaaaaagatctcagcgttctgatgaaggcagggaactttttatcagaaacctagacttc
aaattaaccaaagaagatttggtacctctctttgaaaaatatgggcagattgataaaata
tatgtcccttgtgatagtgaaaccaagaaaaataacggatttgcattcatcaccttcaaa
gaaaaagatgcagcagaatctgctttggagttgaactctgtaccattacttgatcgacct
cttgatgtcagtttagctaagaagaagccaaaaaaggtttcagtacttgaaatgaatcct
gcacctaaaaagaactcaaagttaacaactatcgaagcgtttgacttgccagagactgtt
aacagctcacagctcatgaagatcttctccgctattggacctatcagtaagattactttg
aaacctgaatcccatagcgccttcattgcatatgaagatgtaaataattcaggaagggcc
atgctagtactgaatggcaaacaagttgatgggtttacattgaaactttccgaaaaatct
acgcagcaacagccaagaaaaccctctcaatttccaacttcatttatacccccgtcactt
cagagacgaaaagtttag
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