Komagataella phaffii: PAS_chr1-3_0074
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Entry
PAS_chr1-3_0074 CDS
T01092
Name
(RefSeq) Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03013
Nucleocytoplasmic transport
ppa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PAS_chr1-3_0074
03015 mRNA surveillance pathway
PAS_chr1-3_0074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr1-3_0074
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAS_chr1-3_0074
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PAS_chr1-3_0074
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
AAA_30
AAA_22
Motif
Other DBs
NCBI-GeneID:
8197384
NCBI-ProteinID:
XP_002489410
UniProt:
C4QV56
LinkDB
All DBs
Position
1:join(140637..140646,140744..142182)
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AA seq
482 aa
AA seq
DB search
MSEEKREAKDAAELLNSLSLNKANDNETQPEAKQEVVETGKTEESIKLESKSEPKTEAEQ
KEDSNLIKSTYEVKVKLADLQADPDSPLFSVKSFEELGLSPELLKGLYAMKFQKPSKIQE
KALPLLLSNPARNMIGQSQSGTGKTAAFSLTMLSRVDESKPVVQAICLSPARELARQTLE
VVQQMGKYTKITTQLVVPEAVPRGQPVTANILVGTPGLTLDLIRRKQIDTSNVKVFVLDE
ADNMLDKQGLGDQCVRVKKFLPQTAQLVLFSATFPDEVRKYAGKFVPNANSLELKHEELN
VDGIKQLYMDCDSQEHKFDVLCELYGLLTIGSSIIFVQRKETANMLYKRMKDEGHTVSIL
HGDLESSERDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPVDRQGNADPSTY
LHRIGRTGRFGRVGVSISFVHDRTSYEQLMAIRKYFGNVEMTRVPTDDWDEVEQIVKKVI
KN
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaggaaaagagagaggccaaagatgccgctgaactattgaactctttgtcgctg
aacaaagccaacgataatgagactcaacctgaagccaagcaagaagttgtagaaaccggg
aaaactgaagaatctattaaactggaatcaaaatcggagccaaagaccgaagctgagcag
aaggaagactcaaatttgattaaatcaacatatgaggttaaggtgaaattggcagattta
caggcagatccagactcaccactattttcagtaaaaagttttgaggaattaggactttct
cctgaattactgaaaggtctttatgccatgaagttccaaaagccttctaaaattcaagaa
aaggcattacccctattgttgtcgaatcccgctcgtaacatgatcgggcaatctcaatca
ggaacaggaaagacggctgcgttttcattaactatgttatctcgtgtcgatgagtccaaa
ccagtggttcaagcaatttgtttatctcctgctagggagcttgctagacagacattagaa
gtggtccagcaaatgggcaaatacaccaagatcaccacacaattggttgtgcctgaggct
gtgccaagaggacagcctgtaactgccaatatcctagttggaactccaggattgacactg
gatttgattagaagaaagcagatcgacacttcaaatgttaaggtgttcgttttggacgaa
gccgataatatgctagataagcaaggtttgggagaccaatgtgttagagtcaagaaattc
ttgccgcagacagctcaattggtgctattttcagccacattccctgatgaagttagaaaa
tacgctggtaagtttgtgcccaatgctaacagcctggagttgaaacatgaggaattgaat
gtagatggtattaaacaattatacatggattgtgatagtcaggagcacaaatttgatgtt
ctctgtgagctgtatggattactaactatcggatcctcgattatttttgtacagaggaaa
gaaaccgccaacatgttatacaaacgaatgaaggatgaaggacacacagtctctatctta
cacggtgacctggagagttctgaaagagacaggcttattgatgactttagagaaggtagg
tcaaaggttctgataaccactaacgtgcttgccaggggtattgatattgcatcggtatct
atggttgtcaactatgatcttccagtagacagacagggaaatgctgatccttcgacatac
ttgcacagaattggaagaactggtagatttggtagagttggagtttccatttcctttgtg
catgacaggacatcatacgagcaacttatggccattcgaaagtattttggaaatgtggag
atgactcgtgttcctactgacgattgggatgaagttgaacagattgtcaagaaggtgatt
aagaactaa
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