Komagataella phaffii: PAS_chr1-3_0110
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Entry
PAS_chr1-3_0110 CDS
T01092
Name
(RefSeq) Essential component of the Rix1 complex (Rix1p, Ipi1p, Ipi3p)
KO
K14829
pre-rRNA-processing protein IPI3
Organism
ppa
Komagataella phaffii
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppa03009
]
PAS_chr1-3_0110
Ribosome biogenesis [BR:
ppa03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
PAS_chr1-3_0110
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WDR55
Beta-prop_Vps41
EIF3I
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_CAF1B_HIR1
WDR54
PEP5_VPS11_N
MRP-L28
DUF7638
Motif
Other DBs
NCBI-GeneID:
8197419
NCBI-ProteinID:
XP_002489451
UniProt:
C4QV97
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Position
1:212238..213680
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AA seq
480 aa
AA seq
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MDESVFYTPSTATDAAELSFLASIRSNKSHVQFRQCAANAASITGTGQGHRLFVACPEKA
LIQVYLWGKESPEQKMAVPEELTSLLWVHIFGAGFLVGGGKSGRLYVWELASGYLLSAKE
AHYQEVSCLEVSHDGQVLVSGGKDSRVLIWRLADLIQFSSDPLPKPIHVLTNHSLPITSI
ALTKGISNDIKLFTSSLDGEVRHYNVSNGELLTTFIFGEPVNALAVDPAQRYLYAGLSSG
TIRLVPLFIVNHKNQLESNTGCGKLVSATSADDPESQFIITSHQDSPVTCLQVSADGGLL
VSADSAGKVFVNDIVSRQVARQLRDCSGPISTLRLLINDLERVEPSDLSTKASTPRILPN
LKRSLISDTEISKHDINIPAAGTPEGDIGSLASDNEQLKEQFDLRGFCNQVRKEHVVYQL
NTEEEAAVDQSVQQQQQDTDENVSTQQYASQLKEMTKAYNELKRVHQDLYSEHLKLLDRD
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaagtgtcttttatacaccttcaactgcaacagatgcagcggagctgtcattt
ttggcctccatcagatcaaacaaatctcatgttcagttccgtcaatgtgctgccaacgct
gcttccatcaccggtaccggtcaaggtcacaggttatttgtagcttgtcccgaaaaagca
ttgatacaagtgtacctatggggaaaggaatctcctgagcaaaagatggctgtgccagag
gagctaaccagtttattatgggtacatatatttggagcaggattcttggttggtggtgga
aaaagtggaagactgtacgtttgggagttggcttctggttacctgctaagcgcaaaagaa
gcccattatcaagaagtttcatgtttagaagtctcgcatgatggccaagtccttgttagt
ggtggtaaagattccagagttctgatatggcgtttggccgatctgatacaattctcatct
gatcctcttcccaaaccaattcacgttctaacgaaccattcattaccaatcacgtccata
gcgctaactaaaggtatctctaacgacataaaactgtttaccagttctttggacggagaa
gtaagacattataacgtctcgaatggcgaattgttgactacttttatctttggagaacca
gtaaatgcgctagctgttgatccagcgcagagatacttgtatgctggcttatcttcagga
actattagactagtacctctttttattgtcaatcacaaaaatcaacttgagagtaatacg
ggttgcggcaaattggtttctgcaacttctgcagacgatccagaatctcaattcatcatt
acctcccatcaagacagtccagttacatgcttacaagtttctgcggatggtggactctta
gtcagtgcagattcagcaggaaaggtttttgtcaatgacatagtttctcgtcaagttgct
cgtcaactaagggattgttcaggaccaatatccaccttaagactactgataaacgatctg
gaacgagtagagccttcagatctctctacaaaagcctcaactccacgcatattaccgaac
cttaagcgttctttgatcagtgacacagaaatttccaaacatgatattaatatacctgcg
gcagggacaccagaaggtgatattggtagccttgcgtctgacaacgaacaactcaaagaa
caatttgaccttcgtggtttttgtaaccaagttcgaaaagaacatgttgtctatcaacta
aataccgaagaagaggcagctgtggatcaatctgtgcagcagcagcaacaagataccgac
gaaaatgtctcaacccaacaatatgcctctcaattgaaggagatgaccaaagcttataat
gagctcaagagagtccatcaagacttgtactctgaacatttaaagctattagatagagat
taa
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