Komagataella phaffii: PAS_chr1-3_0272
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Entry
PAS_chr1-3_0272 CDS
T01092
Name
(RefSeq) Putative ATP-dependent RNA helicase, nucleolar protein
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ppa
Komagataella phaffii
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppa03009
]
PAS_chr1-3_0272
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PAS_chr1-3_0272
Ribosome biogenesis [BR:
ppa03009
]
Eukaryotic type
Pre-60S particles
Helicases
PAS_chr1-3_0272
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
CTT_SPB4
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
8196840
NCBI-ProteinID:
XP_002489618
UniProt:
C4QVR4
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Position
1:494885..496729
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AA seq
614 aa
AA seq
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MTTSSLDWDSLSYKLQPWILEGISSLGYDSMTPVQASTIPLFCKHKDVVVEAVTGSGKTM
AYIIPVLEKIAQYYAQDLPLLRGDVLAMILLPTRELASQVQRNFDQLLKFQPDDNKITTQ
LLVGAVGSVREDVYSFLQNRPQILIGTVGRMLEFLGSSNVKPKSLQVLVLDEADRLLDLG
FSHDVLTIIEKLPRQRRTGLFSATISSAGSDIFKTGLANPVRIVVKNNNSDGSKNAVPDS
LGISYISLTTDKKIKTLLELLFKYHYKKAIVYLPTCVGVQYFYLLLQALINNLDLPISSE
DLNLFSIHGKLETAARLKALNGFADSFASKSVLLTTDVAARGLDIPEVDLVIQLDPPTDP
DMFLHRSGRTGRANKVGKAIVMLNEGRELDYIDFMKVRNVHISELKFNGDLELDEISQAM
HSWLLDDRARYDLAVRAMVAFVKSYSKHTASSIFRLQGLDYIKLCRMYGLFRVPKMPETK
FITKEKYEEENVDEEGWIIKVDMDSYKYSHPDKEEKRLEELRTHKKLKESKLRAAKRREQ
KAKNASWSLQTKQKEIKQERRSITEQRQLAKERERIANYNSDDEENEVDWKDAIREQKRR
KTTSTAVQGSFDDL
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgacaacttcgtctctagattgggatagcttgtcctacaaactccaaccttggatactg
gaaggcatttcatccttgggttatgatagcatgacacctgtccaagcttcgactatccct
cttttttgcaaacacaaagatgttgtagtagaagcagttacggggtcaggaaaaacgatg
gcttatatcattccagttttggaaaaaattgcccaatattatgctcaggaccttccttta
cttagaggtgatgtgctggctatgatcttactaccaacaagagagctggccagtcaagtt
cagcgaaattttgaccaactcttgaaatttcagccggacgacaataagatcacaactcaa
ctattggtcggtgccgttggttctgtgagagaagatgtctatagctttttacagaatagg
ccacagatattaattggaactgtgggcaggatgttggagttcctaggctcgtccaatgtt
aaaccaaaatctttgcaagtgttagtcttggatgaagccgacaggctactggacttgggt
ttttcacacgacgtcctaactattatcgaaaagcttccaagacaaagaagaacagggtta
ttttctgctacaatcagcagtgctggctccgatattttcaagacaggattggccaatcct
gtaagaattgttgtgaagaataataacagtgatggttcaaagaatgctgttccagactca
ttgggtatttcctacatttctctaacaacagacaaaaaaataaaaactctattggagttg
ctattcaaatatcactacaaaaaggcaattgtttatctaccaacttgtgttggagttcaa
tatttttacttactactgcaagctttgataaataatttagacttaccaatctcgtccgaa
gatttgaatttgttttccattcatggtaagttagaaactgcagctagattgaaggcctta
aatgggttcgctgacagttttgcctccaaatctgtattactgactacagacgttgcagct
agaggccttgacattcctgaagtagatttggtgatccagttagatcctccaacggatcct
gacatgtttcttcatcgttctggtcgtactggaagggcaaacaaggttggtaaagccata
gttatgcttaacgagggaagagaattggactatatcgattttatgaaggtaagaaatgtc
catattagtgagcttaaattcaatggcgatctagagctagatgaaatatctcaagccatg
cacagttggttgctcgatgatagagctagatacgatctagcagtacgagcaatggtggcc
ttcgtaaagtcctattcaaaacacacagcaagttcaatattcaggttacaagggcttgat
tacatcaaactttgcaggatgtatggactatttcgagtccccaagatgcctgaaacaaag
ttcataacgaaggagaaatatgaggaggaaaatgttgatgaagaggggtggataatcaaa
gttgatatggatagttataagtattctcatcctgataaagaagagaaacgtttagaagag
ctgagaacgcataagaagctcaaagaaagtaagttaagggctgctaagagaagagagcag
aaggcaaagaatgcctcttggagtcttcaaactaagcagaaagaaataaaacaggaacgg
agatctatcactgaacagcggcaattggctaaagaacgagaacgaattgcaaactacaat
tctgacgatgaagagaatgaagttgattggaaggatgcgattagggagcagaaacgtcgg
aaaacaacatccactgcggtgcagggttcttttgatgatctatag
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