Komagataella phaffii: PAS_chr1-4_0108
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Entry
PAS_chr1-4_0108 CDS
T01092
Name
(RefSeq) Exonuclease component of the nuclear exosome
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ppa
Komagataella phaffii
Pathway
ppa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAS_chr1-4_0108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr1-4_0108
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
PAS_chr1-4_0108
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
8197324
NCBI-ProteinID:
XP_002490218
UniProt:
C4QXG4
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All DBs
Position
1:1609599..1611752
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AA seq
717 aa
AA seq
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MKDKVEGVQELFPELANAIRIATAIEAQDIKFYESLDKSLEASVTESSKKLISLTNKILT
CLNAKTLKYDPSNIDTDYTEITNGLDSLCERVDILLDKASKPSSTNDVKYLEDSISKDQA
SRKSSKDMIKPQIEYNYPIDNTESNPFRPLLNQKYNSVVPFEEVHKLVPETDDNPQHHNH
PYEFEINSQEYPKWILERREPIVNQPWESTTAIYVETEQQVGDMIDTLSKADVIAVDLEH
HDLRTYYGLVCLMQISTRNQDYIVDTLKLRFKLQPLNKVFTDPSIVKVFHGAFMDIIWLQ
RDLGLYVVSLFDTFHASKLLGFPKHSLAYLLETYAKFKTSKKYQLADWRVRPLTKPLLAY
ARSDTHFLLYIFDQLNNMLIESGKLSQVLYDSRQVALRRFEYTKFRPNFPTPLVVSPLND
RKEPWKQLLYLYNIPRSRQPVFIALYNWRDEIAREDDESTRYVLPNQLLATITSISPTDV
SSLMSCSNIRTPYLKKYATELVEIIKSTLKEGAENQDVKSLTSNGIEKKAENVDYQTVLN
SDRLYSHLMDSQKQLDNEALNLLIQDSRILLHSSNVAVSYSKNNVSEESLDERGTSQVLK
ILAPQALVVSESENEEEEVKTPETKAEPEKEDPREVIVLNRSARSKPQPVVPEVDDQPPL
DFAGADKVMLEIEPRKKPKQSRKKRSFDPYAQSNKDPHPEPKKHAKFNENRSAVFKK
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacaaagtagaaggagttcaagagctctttcccgaattggcgaatgccataagg
atagctacagctatagaggctcaggatattaagttttatgaatctttggataaatcgttg
gaagcatctgtgacggaatcgagtaagaaactgatctctcttacaaataaaatacttaca
tgtttgaatgctaaaacgctcaaatatgacccttctaatattgacactgattatacagag
attacaaatggcctggatagtctgtgcgaaagagtggacattcttttagataaagcaagt
aaacctagtagtacgaatgatgtcaaatatttggaagacagtatcagcaaagatcaggct
agcagaaaatcaagcaaagacatgatcaagcctcaaatcgaatataattaccccattgac
aacacagagtctaatcctttcaggcctctactcaatcaaaagtataatagtgtagtgccg
ttcgaagaggtccataaacttgtcccggagactgatgacaatccgcaacaccataaccac
ccttatgaatttgaaattaatagccaggaatatccaaaatggattttggaaagaagagag
ccgattgtgaatcagccttgggagtcgactactgcaatttatgtggagacagagcaacaa
gtcggagacatgatagatacgctaagtaaagcagatgtcatcgcagtggacttggagcat
catgatcttcgtacttattacggtttggtgtgcttgatgcaaatcagtactcgaaaccag
gattacattgttgatacgctaaagttaagattcaaactacaacccttgaataaagttttt
acagacccctctatcgtcaaagtatttcatggagcattcatggatataatttggctacaa
agagaccttggtctttacgtagtcagtttgtttgatacttttcatgcgtcaaagctgcta
ggatttcctaagcacagtttggcttacctattagaaacatatgcaaagttcaagacatct
aagaagtaccaacttgcagactggcgagtgagaccattaactaaaccattactagcatac
gcgaggtcagacacccattttctgttgtacatttttgaccagttgaataatatgctgata
gaaagtggaaaactttctcaagttttgtatgattctcgtcaagttgccttgcgaaggttc
gagtatacaaagttcagacctaactttcctaccccattggttgtgtctcccttaaatgat
cgaaaggaaccttggaagcaacttctttatctctacaatattccacgatcaagacaacct
gtttttatcgcattgtataactggagagatgagattgctcgtgaagatgatgagtctaca
agatatgtccttcctaaccaattgttggcgactatcacaagtatcagccctaccgatgtt
tccagtttgatgtcctgctcaaacataagaactccttacttgaagaaatacgccactgag
ttagtggaaattatcaaaagcacgttgaaagaaggggctgagaaccaggatgtcaagtct
cttactagtaatggtatagaaaaaaaagcagagaatgtcgattatcagacagttttgaat
tctgatagattatactcccatctaatggacagccaaaaacagttagacaatgaagcactg
aacttgctcatccaggattctaggatattactgcattcatccaacgttgcagtatcttat
tcaaagaataatgtcagtgaagaatcgctagatgaacgtggcactagtcaggtactgaag
attcttgcaccccaagcgctagttgtaagtgaatcggagaacgaggaggaggaagtcaag
actccagaaacgaaggctgaaccagagaaagaggatccaagagaagtgattgttttaaat
agaagtgcaaggtcgaaaccacaaccagttgtaccagaggtagatgatcaaccaccatta
gattttgcaggagcagataaagtgatgctagagatagagcccaggaaaaagcccaagcaa
tcacgcaagaaacgtagttttgatccttatgcgcagagcaataaagatccacatcctgaa
cctaagaaacacgctaagttcaatgagaatcgaagtgctgtctttaagaagtag
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