Komagataella phaffii: PAS_chr1-4_0118
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Entry
PAS_chr1-4_0118 CDS
T01092
Name
(RefSeq) DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr1-4_0118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppa03041
]
PAS_chr1-4_0118
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PAS_chr1-4_0118
Spliceosome [BR:
ppa03041
]
Complex C
Other components
Step II factors
PAS_chr1-4_0118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
ABC_tran
AAA_19
nSTAND3
NB-ARC
AAA_7
S1_RRP5
SRP54
TssR_VWA
ResIII
T2SSE
AAA_30
TsaE
Cas3-like_C_2
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
8197334
NCBI-ProteinID:
XP_002490228
UniProt:
C4QXH4
LinkDB
All DBs
Position
1:1623048..1626065
Genome browser
AA seq
1005 aa
AA seq
DB search
MKLLDLLRSLQPDLSASELDLMEGFISDLYKKSSTLDAFQEVLKENGAEFSVTDIFKIDK
LLDGKWISEPTKPHKQEPPHHTDTNTLYNSQITAHNQERKKKDSINSRLQPIIVGASYSG
QITNITPYGAFIRLQALRRPTGLCHISEMSSSEIRHPLDVANVGDKVTATVLSVSSNKIS
LSLKNPDELQLRGQIQRGRSEVRDTKVRKQLSSPEKWEIRQLISSGALKASDYPELDDEY
QSVLDEHKRGYNDREKDEEVEIVVKQKPPPFLNGKSSSLREISPIRVIKTPEGSLNRSAM
NGSDLLKERKELKKGLRPEISNKVSEWKDSIKKDSYGKTTTKNLQEQRESLPVFSMKQML
LETVKNNKFVVIVGETGSGKTTQITQYLAEEGFNKGNMIIGCTQPRRVAAVSVAKRVSEE
VGCRLGQEVGYTIRFEDNTSDVTKIKYMTDGMLQREAMVDKMLSKYSVIMLDEAHERTIA
TDVLFVLLKTAAMKRDDLKIIVTSATLDSGKFSTYFENCPIIQIPGRTFPVEIFYTKEPE
LDYLQATLECVLSIHKNESRGDILVFLTGQEEIDTCCEVLYEKLIDLHQENELIILPIYS
SLPSEMQSKIFEPTPVGKRKVIIATNIAETSITIDGIYYVIDPGFVKVNAYDPKLGMDSL
MVTPISQAQAKQRAGRAGRTGPGKCFRLYTETGYNKEMLPNSIPEIQRQNLAHTILMLKA
MGVQDLIGFEFMDPPPLKTMLSALEELYNLEALTEDGDLTELGRRMADFPMDPGLAKVLI
KSIEFGCSEEMLSIVSMLSVQSIFYRPTGELRKKADEKRVRFNHPHGDHMTMLNVYEKWV
RNGSSKEWCKDNFIHYRSLLRVRDVRTQLKKIMNKYGSEMRSCGQNSNLIRVNLCCGFFK
NTAKKDSETSCYKTLLENTTVYLHPSSSLFGKSSSEYVIYHTLLLTTKEYMHCVSVIEPT
WLVEQAPRFFAKADTEQVNKRKRTVKIQPLYNRFDQQQSWRLSKR
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgaagttattagatttgttgagatccttgcagccggatttatctgcaagcgagttagat
ttgatggagggatttatatccgacttatacaagaaatcctccactttagacgcatttcaa
gaagttttgaaggagaatggtgccgaattttcagttactgatatcttcaaaatcgacaag
ctactagatggaaagtggataagtgaaccaaccaagccacacaaacaggaaccgccacat
catactgatactaatacgttgtacaatagccaaatcacggctcataaccaagaaagaaag
aaaaaagatagcataaattccaggctccaacctattatagttggggccagttattcagga
cagattactaacataacgccttatggtgctttcatcagattgcaagcattaagaaggccc
actggactttgccatatatcagaaatgtccagttcagaaattagacacccattagatgtg
gctaacgtgggcgataaggtgacagcgaccgtgctgagtgtttcctccaataaaatatcc
ctcagtctcaaaaacccagacgaattgcagctaagaggtcaaatacagagaggtcgatca
gaagttcgggacactaaagttcgaaaacaactatcatccccagaaaaatgggaaattcga
cagttgatatcttccggagctctgaaggcttctgattacccagaactagatgatgaatac
caatcagtcctggatgagcataaacgaggatacaacgatagagagaaggatgaagaagta
gagatcgttgtaaaacagaagcctcccccattcttgaacggtaaatcatcttctctaagg
gagatatcaccgataagggtcataaaaacccctgaaggatctttgaatagatcggcgatg
aatggttctgatttgttgaaggagcgcaaagagttaaagaaaggcctgaggcctgagatc
agcaataaagtctcagaatggaaagactctattaagaaagactcatatggtaaaaccacc
accaagaacctacaagaacaaagggagtctttacctgtattttctatgaagcaaatgcta
ctggaaaccgtcaagaataataaatttgtcgttattgtaggtgagacgggttccggtaag
actacccagattacccaatatttggccgaggaaggatttaataaagggaatatgatcata
ggttgcacccaacctcgacgagttgctgctgtgagtgttgcaaaaagagtatcagaagaa
gttggctgtaggctggggcaggaagttggttatacaataagatttgaagataatacttcg
gatgtaaccaagatcaagtacatgactgacggtatgcttcaaagagaggcaatggttgat
aaaatgcttagtaaatactctgtcattatgctagacgaagctcatgagagaaccattgcg
acggatgttttattcgttctcttaaagacagcagcgatgaaacgagacgaccttaagatc
attgtcacatctgcaacattagacagtggaaagttttccacttactttgaaaactgtcca
ataattcaaattcccggaagaacattcccagtggaaattttctacaccaaggaacctgaa
ctagattacttgcaggcaacattagaatgtgtactgtctatccataagaatgagtcaaga
ggtgacattttagtatttttaacaggtcaagaggaaattgatacatgctgtgaagtgtta
tacgaaaaattaatagatcttcatcaagaaaatgaactgataattttacccatttattct
tctttaccctcagaaatgcagtctaaaatatttgaaccaaccccagttgggaaaagaaaa
gtcattatagccactaacattgcagagacgtctattactattgatggcatatactacgtc
attgatccaggatttgtcaaggtaaatgcttacgacccaaaacttggaatggattcttta
atggtgacacctatatctcaagcacaagcaaagcaaagagctggtagagcaggtagaact
ggaccaggcaaatgcttccgattgtatactgaaaccggatacaataaggaaatgttaccc
aatagtattcctgaaatccaaagacagaatctcgcacatacaattcttatgctaaaggcg
atgggggttcaagacctaattgggtttgagttcatggacccaccgccattaaaaacaatg
ctaagtgcgttggaagaactatacaacttggaggctctgacggaagatggcgacttgaca
gaattgggccgtagaatggcggatttcccaatggatccgggtcttgccaaggttttgatc
aaatccattgaatttgggtgcagtgaggagatgctaagtattgtatctatgttatcagtg
cagtcaatcttctacagacctacgggggaactgagaaaaaaggccgatgaaaaaagagtc
cgatttaaccatcctcatggagaccatatgactatgctaaatgtgtacgagaaatgggta
agaaacggtagctccaaggaatggtgcaaagataacttcattcattataggagtcttctt
cgggtaagggatgttaggacacaactaaaaaaaataatgaacaaatatggttctgagatg
agaagttgtgggcagaatagcaacttgattcgagtaaacttgtgctgtggttttttcaag
aatactgccaaaaaggatagtgaaacatcatgctataagactctattggagaataccaca
gtgtatctccacccctcatcctccttatttggaaaatcatcatcagaatatgtgatttat
cacactctattactgacaacaaaggagtatatgcattgtgtgagtgtaattgaacccact
tggttagttgagcaagctccaaggttcttcgccaaggcggatactgagcaagtaaacaag
agaaaacgaacagtgaaaattcagccgctttataatcgtttcgaccagcaacaaagttgg
agactcagtaagaggtaa
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