Komagataella phaffii: PAS_chr1-4_0186
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Entry
PAS_chr1-4_0186 CDS
T01092
Name
(RefSeq) U1 snRNP protein involved in splicing
KO
K12821
pre-mRNA-processing factor 40
Organism
ppa
Komagataella phaffii
Pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr1-4_0186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppa03041
]
PAS_chr1-4_0186
Spliceosome [BR:
ppa03041
]
Complex A
U1 snRNP components
U1 related factors
PAS_chr1-4_0186
Complex B
PAS_chr1-4_0186
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Choline_bind_3
Glyco_hyd_101C
PDDEXK_11
Motif
Other DBs
NCBI-GeneID:
8197168
NCBI-ProteinID:
XP_002490300
UniProt:
C4QXP6
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All DBs
Position
1:1745035..1746432
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AA seq
465 aa
AA seq
DB search
MKWQSATDQDGNTYYYNPETGETSWENPEATAENIDEDPKGETDEDSEWKEYTTDDGKSY
YYNEKTGQSVWEDPRKQALASEVKGDGEEGEIKFKDINLSDYVVQSALIGDETQTRSPEQ
RETDFIAMLNERNIDPKLPFTKAISLIIQDSRYWNVEDSLKRNDLYQSYQVSKQQEVFKE
QQDAEQSFKNTFLKVLSNYPEIKYYTRWKTCSRLIIDEPIYSLGSEKLKRRLFEEYTSSL
REEHERQTNELKSNELQDLKTYLKSSLTIESKWKDISGQLMEKFPHLSSMEQLGCYEQEM
DLHVKQLDQAIKLNQKLNYRKDRQARDSFKKAISLKLKEIQNANLTYYEYIQQIKDLPEF
KEILGRNGSSPIDVFWDLLDSENYGLQQILIQLLIKPEMENISDLESFKRKIADLDYQVS
DKNSNILFGMFQVEKEKELQSKKRKITPEVSRPKKKINTFGYGSF
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggcagtctgctacggatcaagatggaaatacttattactacaatcctgaaact
ggagaaacgtcgtgggagaaccctgaagccactgctgaaaatatcgacgaggacccaaaa
ggagaaactgacgaggattctgagtggaaagagtataccactgatgacggcaagagctac
tattacaatgagaaaaccggccagagtgtatgggaggatcccaggaagcaagcattagca
tcagaggtcaagggcgacggcgaagaaggagagataaaattcaaagacataaatctatct
gattacgtagtgcaatctgcattaatcggagatgaaacacaaacaagatcaccagaacaa
agagaaactgactttatagccatgcttaatgaaaggaatattgatccaaagttaccattt
accaaagctatttcattaatcattcaagattccagatattggaacgtggaggattccctg
aagagaaatgacctataccagtcatatcaagtatccaaacagcaggaagtctttaaagag
caacaggatgcagagcagtcatttaaaaacacatttctcaaagtcttatctaattaccca
gagataaaatattatacaaggtggaaaacctgttccagattaatcattgacgagcctata
tactctcttggatccgagaaattgaaaagaagattgtttgaagagtacactagcagtctc
agagaggaacacgaaagacaaactaatgaacttaaatctaacgaactgcaagatctgaag
acatatttaaaatcaagcttaactattgaatcaaaatggaaagatatatcaggtcaattg
atggaaaagttccctcatctttcatctatggagcagttgggctgctatgaacaagaaatg
gacctccatgtaaagcaattagaccaagctatcaaactcaatcaaaagcttaactacagg
aaagacaggcaagcaagagattcgtttaaaaaggcaatttctttgaaactaaaagagatt
cagaatgcaaatttaacatattatgagtacatccagcaaatcaaagacttaccagagttt
aaagaaattttgggtcgaaatggatcctcccctattgatgtattttgggacttgctggat
agtgaaaattatggactgcaacaaatattgattcagttattaataaagccggaaatggaa
aatatatctgatcttgaatcattcaaaagaaagattgctgacctcgattatcaagtctct
gataagaactcaaatattctctttggaatgttccaagtggagaaggaaaaagagttgcaa
tctaaaaaacggaaaattacccctgaagtttcacgacccaaaaagaaaatcaatactttt
ggctatggatctttttaa
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