KEGG   Komagataella phaffii: PAS_chr1-4_0269
Entry
PAS_chr1-4_0269   CDS       T01092                                 
Name
(RefSeq) Replication factor C subunit
  KO
K10754  replication factor C subunit 1
Organism
ppa  Komagataella phaffii
Pathway
ppa03030  DNA replication
ppa03410  Base excision repair
ppa03420  Nucleotide excision repair
ppa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PAS_chr1-4_0269
   03410 Base excision repair
    PAS_chr1-4_0269
   03420 Nucleotide excision repair
    PAS_chr1-4_0269
   03430 Mismatch repair
    PAS_chr1-4_0269
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppa03032]
    PAS_chr1-4_0269
   03400 DNA repair and recombination proteins [BR:ppa03400]
    PAS_chr1-4_0269
DNA replication proteins [BR:ppa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    PAS_chr1-4_0269
DNA repair and recombination proteins [BR:ppa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     PAS_chr1-4_0269
SSDB
Motif
Pfam: RFC1 BRCT AAA Rad17 AAA_22 RuvB_N nSTAND3 AAA_16 AAA_14 AAA_18 AAA_17 PTCB-BRCT AAA_assoc_2 RNA_helicase AAA_33 NTPase_1 AAA_28
Other DBs
NCBI-GeneID: 8196940
NCBI-ProteinID: XP_002490384
UniProt: C4QXY0
LinkDB
Position
1:join(1892663..1892719,1892769..1895438)
AA seq 908 aa
MVDIRDFFGNAKQSTATQSKLKRKVSDAEKIVSKKPKTPTEDENVRSKANQSPFFSSNGD
SQAANNKGDAINLDSDDDDLYISILDEDSPEKPKSPISQRKRKNSPTEEFPKKPKSPVKK
KASSTPKSKPVVNVESMDSPKPEPKINNADAQGVEAPKLAEKSTNQFNGLSAEAILETIP
DAELPEEQDTAKLNLRDFKKKQTELPQSSTPLEDLPQGRPNCLIGLTMVFTGVMPTIDRT
QAEELAKRYGAKVTKSVSKKTSVVVLGSEAGPSKVKKIKDFKIKAIDEDGFITLIKSMPA
DGGSGEAAAKALEKKKQEEELSIKQAEKEEAESQKNPSAQEATNSALWTVKYAPANLNQV
CGNKTNIKKLTNWLSNWFENKRSGFKHPGPDGTGVFRACLISGPPGIGKTTAAHLVAKSL
GFDIIEKNASDVRSKSLLMSDVKTVLDNTSLVGFFHSQDNAESNQRKFCLIMDEVDGMSS
GDHGGVGALAQFCRITSTPIILICNDKSLPKMRPFDRVTLDLPFRRPSASELKSRIMTIA
HREKLQLDPNVIDQLVEATKNDIRQIINLLSTVSKTQKIIGFENAAEIKQAWKKEVALKP
FDITSRILSGGIYAPSSNFSLNDKLGLFFDDIDFSPLMVHENYRSTVPTKLANVSPNEEN
LKHLELLSQAADSISEADLVNNCIRGGEQQWSLLPFFGLLSTVRASSFVAGSLRGRINFT
SYLGQNSKKLKYDRLLQELQYHSSTKTLTNNIEFRLSYMSPLITKLSHPLLEKGTEGIDD
VLSTLDAYCLTKEDWDTIMDFGIGSYSMALKLKKIPPSVKTAFTRKYNSYTHPTVIYATG
NSVSSTRVKVTPDLEDVVQDDMDDVEDDTPTDEGKSDIKNDKLIKEVKPKKKKATSKAKS
TATKRKNN
NT seq 2727 nt   +upstreamnt  +downstreamnt
atggtagatatcagagacttctttggcaatgctaaacaaagcactgccactcaatcaaaa
ctaaagcggaaggtttctgatgcggagaagatagtgtcgaaaaaaccaaagactccgaca
gaagatgagaatgtgcggtcaaaagcaaatcagagcccctttttctcttcaaatggcgac
agccaagcagcaaataacaaaggtgatgcgatcaatttggactctgatgatgatgatctg
tatatttccatccttgacgaagactcacctgagaaaccgaagagtccaatttcacaaaga
aagagaaaaaattccccaactgaagaatttcctaaaaaaccaaagtctccagtaaagaag
aaagcatcatctaccccgaaatctaaacctgttgtcaacgttgaatctatggacagtccc
aaaccagaacctaagatcaataatgctgatgcccaaggagtcgaagctcccaaattagca
gaaaaatctactaaccaattcaatggtctttctgctgaagcaattcttgaaactatccca
gatgcagagttaccagaagagcaagataccgcaaagctgaatttaagagacttcaaaaag
aaacaaacagagcttcctcaatcgtccactccccttgaagatttaccacagggtagacct
aattgtttgatcggattgaccatggtatttacaggtgtgatgcccactatagatcgtact
caagctgaagaattagctaagagatacggtgcgaaggtgaccaaatctgtcagcaagaaa
acgtcagtggtagtcttagggtctgaagccggtccttcgaaagtgaaaaaaattaaggat
ttcaaaatcaaagccatagatgaagatggattcatcactttaatcaaatctatgcctgct
gatggtggttctggtgaagcagcagccaaagccctagaaaagaagaaacaagaagaagaa
ttatcaatcaagcaggctgagaaagaagaagccgagtcacaaaaaaatcctagtgcccag
gaggccaccaattcagctttatggacagtaaaatatgcaccagcaaacttgaatcaagtt
tgcggtaacaaaacgaacataaagaagctgaccaattggctgtcaaactggtttgaaaat
aaacgatctggttttaagcatcccggtccagatgggaccggagtatttagagcatgcctt
atcagtggaccaccaggaattggaaaaactaccgcagcacacctagtggccaaatcgtta
ggatttgacattattgaaaagaacgcatcagatgttagatcaaaatctttgttgatgagc
gatgtgaaaactgttttggacaatacttctctggttggcttctttcattcacaagacaac
gctgaaagtaaccaaaggaagttttgtttgataatggatgaagttgacggtatgtcaagc
ggagatcatgggggtgttggagcattggctcaattttgtcgaattacttcaactcctata
attctaatctgtaatgacaaatcattacctaagatgagaccttttgacagagtcacattg
gacttgccatttagaagaccaagtgcttctgaattaaaatctagaattatgaccattgcg
catagagaaaaactacagttagatcccaatgttattgatcagttggttgaagcaacgaaa
aatgacatccgtcaaattataaacctgttgtccacggtttccaagacacaaaaaattatt
gggtttgaaaacgctgcggagattaagcaagcatggaaaaaggaggttgcattgaaacct
tttgacattaccagtaggattctatccggaggaatctacgccccaagttcaaatttttca
ctgaatgacaaattggggcttttcttcgacgatattgatttttctccattgatggttcat
gagaattatagaagcacagtgccaacaaagctggcaaatgttagccctaacgaggagaat
ttgaaacacttagaattactctcccaggctgcagattctatttccgaggctgatctggtg
aataattgcatcagaggcggagaacaacagtggtccttactaccattctttggtctttta
tcgacagttagagcctcaagctttgtagcaggttcgttgagaggaaggatcaatttcaca
tcatacttgggtcaaaattcgaagaagctaaagtacgatcgattattacaggagctacag
tatcattcttctacgaagactttgacaaacaacatagagttcagactctcatacatgtca
cctttgatcacaaaactttcccatcctctgcttgaaaagggcactgaaggaatcgacgac
gtactatctacgcttgatgcatattgtctcacgaaagaagattgggacactattatggac
tttggaattggatcctactctatggctcttaaattgaagaagatacccccttctgttaag
acggcttttactagaaagtacaattcttacacccatccaacagtgatttatgctactgga
aactctgtctcttctacgcgagtgaaggttaccccagatttagaggatgttgttcaggat
gatatggacgatgtcgaagatgacacaccaacggatgaaggtaaatccgatatcaaaaat
gacaagctcattaaggaagtcaagccaaagaagaaaaaagcgacttcaaaggcgaaatca
accgctaccaagagaaaaaataattga

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