Komagataella phaffii: PAS_chr1-4_0513
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Entry
PAS_chr1-4_0513 CDS
T01092
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ppa
Komagataella phaffii
Pathway
ppa03440
Homologous recombination
ppa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PAS_chr1-4_0513
03450 Non-homologous end-joining
PAS_chr1-4_0513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppa03032
]
PAS_chr1-4_0513
03400 DNA repair and recombination proteins [BR:
ppa03400
]
PAS_chr1-4_0513
DNA replication proteins [BR:
ppa03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
PAS_chr1-4_0513
DNA repair and recombination proteins [BR:
ppa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
PAS_chr1-4_0513
BRCA1-C complex
PAS_chr1-4_0513
NHEJ (non-homologous end-joining)
MRX complex
PAS_chr1-4_0513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_21
AAA_15
AAA_29
TACC_C
NPV_P10
ABC_tran
AAA_16
AAA_13
AAA_22
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
8197097
NCBI-ProteinID:
XP_002490645
UniProt:
C4QYP1
LinkDB
All DBs
Position
1:complement(join(2338685..2342576,2342689..2342768))
Genome browser
AA seq
1323 aa
AA seq
DB search
MANWKDLRGGKVVHLSRSPKHIAPGSPSSIYKLAIQGVRSFDPHTPETIQFSKPLTLIVG
QNGSGKTTIIECLKYATTGDLPPNSKGGAFVHDPKIAGDNQVKAQVKLAFQNISGVSMIL
TKTLQVVQKPGKSLQFKTLENQLSVINNGERTRVSQKAAEIESLIPNYLGVSKAVLNYVI
FCHQEENLWPISEPMALKKKFDEIFDSVKFIKVLEGFKGITKDMSVDIKLLTNNVEHLKN
DKKRADLKRAEMEALQNTVEDYNAEIIDLNTQVEEVTRKLDELFKSNQDFEKVLSKLDFL
ATEKQSTQQQIDRLFSSLTVLPDSTEILENNLSNYGKLLTEKRVKVNEQIQLAKEASESL
NALRDEYSDTIKKEGELRGLESTYKNYIQERIQLIQENASLLGMTISETTISSDEIEEAS
SKASVLFSTCKKKLDLQTEHYDTRIHDLNLEIGQAESKLGKEEERSSYLKNDINSLKKRN
QALQKSINDINSNESEFNETKEDIERLTKQLEDLRSENKLASINNDLKQNQDKILVLENE
LDQINKQIITSNRQGEVLAKLHLLKENTKKGNSSISKLVESYGEQFKEFTGEDLNPEDCL
PVFLEVLKKRQEDTDLKRKEVASFKQNEYESNHDRSLLEKKLEQSRSQLQECRSRIVSIL
EDEPIEEYESIVKDLESDYEIALQNSKLNWATKNFNETALKIAKEHQYCILCKRELNHDE
LGPVMVTISENIEKANDDLYSKEKDRIKQDLDDLKSIRDDISNFRNLEGSIASANDELNE
LKTFVSDDLARVSSELEQLESDLVSLESLRKHVVEISKLQEDLSHYYVENKSIESELSAY
GVPAKTLSELQEDLNGKNFQLKELRRQADDLKEQREFSNRELSMLEGNVKDKRLLISNFE
KSLMIKLNLEKGIDENKARIDELQQTGETVLESMKLTKDRLNKLKDNVKTLEEERDSTLT
QLQSNVEQFKTVQDSLVRLNSFVNKYELEDEPILRQCEKNSEHLKASIKDAEGQLNKLHE
KVNVLEKQLSEADTEERNIKFNLDLRSLNKELVQIEESIESLDRQNATSKRQEFQKETAI
LRESYSRLSSAHSSKMGEVSQLQKQIQSITEEIKRDYEHVEDEYYQEYLKLQTKMFISND
ISVYSKGLDNAVMKYHSIKMEEINRIIDELWKRTYSGTDVDTIMIKSDMNTQVKGNRSYN
YRVVMMKEDVELDMRGRCSAGQKVLASIIIRLALAECFGVGCGMIALDEPTTNLDEENIE
SLAKALNSIIHLRMSQKNFQLIVITHDEHFLRHMNATEFCDHFFRISRNERQKSQISMVK
NFD
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atggccaactggaaggacctgcgcggaggaaaagttgttcatctctcccgttctcctaaa
catatcgcgcctggatccccgtcttcaatttataaattggccatacagggagtgcggtct
tttgaccctcacactccggagacaattcagttcagcaagcctttaacattaatagttgga
cagaacgggtctgggaagacaaccatcatcgagtgcttgaagtatgcaaccactggagat
ttgccgcccaattctaaaggaggtgcctttgttcacgatcccaagatcgccggagataac
caagttaaagcgcaggtcaaattggcatttcagaacataagtggagtgagtatgattctg
acgaaaactttacaggtcgtacaaaaacccggcaagtctttgcaatttaaaactttagag
aatcaattgtctgtgataaacaacggagaaaggacacgagtgtcgcaaaaagccgcggag
attgaatcgttaatccctaattacttgggtgtatctaaagcggtgctgaactatgtcatt
ttttgccatcaggaggaaaatttatggccaatttctgaaccaatggcactgaaaaagaaa
tttgatgagatttttgattctgtcaagtttatcaaggtgttggaggggtttaaaggcatc
acaaaagatatgagtgtcgatatcaaactactcacaaataatgtggaacatttgaaaaat
gacaagaaaagggccgacttgaagcgggcggaaatggaggctctgcagaacactgttgag
gattacaacgctgaaattattgatctgaatacccaagtcgaggaagtcactagaaagtta
gatgagttattcaaatcaaatcaagattttgaaaaagtcttatcaaagttagattttctg
gctacagaaaagcagagtactcaacaacagattgataggcttttcagttctctgacagtg
ctacctgatagcacagaaatcttggagaataacctgtcgaattacggcaaacttttgacc
gaaaaaagagtcaaggttaatgagcaaattcaactcgcaaaagaagcctcagaatcttta
aacgctctgagagacgaatacagtgatactattaaaaaggaaggagaacttagaggttta
gaaagtacctataaaaattatattcaggaaagaatacaactaatccaagaaaatgcgtct
ctacttggtatgactatctccgaaaccacgattagttcagatgagattgaagaagcctcc
tccaaggcatcggtcctcttttccacctgtaaaaagaaacttgatctacaaacagaacac
tatgacacccgtattcacgatcttaacttggaaataggacaggccgaaagtaaacttgga
aaggaagaagaaagatcatcctatttgaaaaatgacatcaacagtctgaagaaacgaaat
caggctcttcaaaaaagcatcaatgatatcaattcgaacgagtctgagtttaacgaaact
aaagaagatatcgagaggctgactaaacagcttgaggatcttaggtcagaaaacaaactg
gcatcaattaataacgatctgaagcaaaatcaagataaaattcttgttctggaaaacgag
ttggaccagattaataaacaaataataactagtaaccgacaaggtgaagtattggcaaag
ttacacttactcaaggagaataccaaaaaaggaaactcatcgatttcaaaattggttgaa
agctatggtgaacagtttaaagagttcactggtgaagatcttaaccccgaagactgctta
cctgtgtttctggaggttctgaaaaaacgccaggaagatactgatttaaagaggaaagaa
gttgcatcattcaagcagaacgaatacgagagtaatcatgataggtctttattagaaaag
aaactggagcaaagtagaagtcagcttcaggaatgtcgtagtcgaattgtatcgattctt
gaagatgaaccaatagaggagtacgaatcgatagtcaaagacttggaatcagattacgag
attgctttgcaaaattctaaattgaattgggccaccaaaaactttaacgaaacagcacta
aagattgccaaagagcatcagtattgtattttgtgtaagagagagctcaatcatgacgaa
cttggaccagtaatggtaaccatttcagaaaatattgaaaaagccaacgacgacctttat
tctaaagagaaagatagaatcaagcaagatctggatgacttgaagagtatcagggatgat
attagcaattttaggaacttagaaggttcgattgcttcagctaatgacgagttgaatgag
ttgaagacttttgtttctgatgacttggcaagagtaagttcagaactcgaacagcttgaa
agtgatttagtctccctggaatctctacgaaaacacgtagttgaaattagcaaacttcaa
gaggatttgagtcattattatgttgaaaacaagtccattgaatctgaattgagtgcgtat
ggtgttccagctaagactttatctgaacttcaggaggatttgaatggtaaaaactttcaa
ttgaaagaattgagaaggcaagctgatgatcttaaagaacaaagagagttttcaaatcga
gagttaagcatgcttgaaggcaatgtgaaggataaacgtctattgattagcaattttgag
aaatcgttaatgattaaacttaatttggagaagggaattgatgagaataaggctagaata
gacgaacttcaacaaacgggagaaactgtacttgaatccatgaaactgaccaaagacaga
ttgaataagcttaaggacaacgtgaaaactcttgaagaggaaagagattctactttaact
caattgcaaagcaacgtggaacagttcaaaacagtacaggatagcttggtgcgattaaac
tctttcgtcaacaagtacgagcttgaagatgagccaattttgaggcaatgcgaaaagaat
agtgaacacctgaaagcctccatcaaagatgcagagggtcagttgaacaaacttcatgaa
aaagtcaatgtgctggaaaagcagctaagcgaagcagataccgaagaacgaaacattaaa
ttcaacctggatctaagaagcctaaacaaggagctcgttcagatcgaagagagtattgaa
tcccttgatcggcagaacgcaactagtaaaaggcaggagtttcaaaaagaaaccgccatt
cttagagaaagttattcccggttaagttccgctcatagtagtaagatgggggaagtgtcc
caattgcagaaacagattcagagcataacagaggaaatcaagagggattatgaacatgtc
gaagatgaatactaccaagaatacttgaaactgcaaactaaaatgttcatttcaaatgat
atctcggtttattccaagggattggacaatgctgtaatgaagtatcattccattaaaatg
gaggagattaatagaattattgacgaactttggaagagaacgtacagtgggacagatgtt
gacacaatcatgatcaaaagtgacatgaatactcaagttaaaggcaatagatcttacaat
tacagggtagtcatgatgaaagaagatgtggaattggatatgagaggaagatgttcggca
ggccagaaagtactcgcaagcattatcatcagactagcattggctgaatgttttggagtt
gggtgtggcatgatagcacttgatgaaccaacgacaaaccttgatgaagagaatattgaa
agtcttgccaaggcactcaattcaatcattcatctaagaatgtctcaaaagaactttcaa
ctaattgtcattactcacgatgaacacttcttaagacacatgaatgctacagagttttgt
gatcatttttttagaatcagcagaaacgagaggcaaaaatctcagatatcaatggtaaag
aactttgattaa
DBGET
integrated database retrieval system
