Komagataella phaffii: PAS_chr1-4_0556
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Entry
PAS_chr1-4_0556 CDS
T01092
Name
(RefSeq) Replication factor C
KO
K10756
replication factor C subunit 3/5
Organism
ppa
Komagataella phaffii
Pathway
ppa03030
DNA replication
ppa03410
Base excision repair
ppa03420
Nucleotide excision repair
ppa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PAS_chr1-4_0556
03410 Base excision repair
PAS_chr1-4_0556
03420 Nucleotide excision repair
PAS_chr1-4_0556
03430 Mismatch repair
PAS_chr1-4_0556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppa03032
]
PAS_chr1-4_0556
03036 Chromosome and associated proteins [BR:
ppa03036
]
PAS_chr1-4_0556
03400 DNA repair and recombination proteins [BR:
ppa03400
]
PAS_chr1-4_0556
DNA replication proteins [BR:
ppa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
PAS_chr1-4_0556
DNA Replication Termination Factors
ELG1-RFC complex
PAS_chr1-4_0556
Chromosome and associated proteins [BR:
ppa03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
PAS_chr1-4_0556
DNA repair and recombination proteins [BR:
ppa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
PAS_chr1-4_0556
Check point factors
HRAD17(Rad24)-RFC complex
PAS_chr1-4_0556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA
AAA_30
AAA_22
DUF4992
ABC_tran
Motif
Other DBs
NCBI-GeneID:
8197687
NCBI-ProteinID:
XP_002490692
UniProt:
C4QYT8
LinkDB
All DBs
Position
1:2436199..2437308
Genome browser
AA seq
369 aa
AA seq
DB search
MSLWADKYRPKTLDDLDYHGKISNMLSSLATSGDFPHLLFHGPSGAGKKTRILATLRQIY
GPNIEKLKVDPKVFVTATKRKLEFNVVSSPNHLEITPSDMNNNDRVVIQDLLKEVAQTET
IDFTHVADHKNRFKVVIINEAELLTRDAQAALRRTMEKYSANIRLVLVCNSISSIIEPIK
SRTLLIRVAAPTDEEMGSVFEKVLRDQPEVAKSFPADETERQQIYSKIAKVTDHNLRTGL
LLLEALYSYNPSITTKTPMIMPDWENVIKKLAIGIVTERTVSKLQQSRTDLYELISHSIP
AKLILKKLTIEFWRLVDEDSKIKDKDTVKMDIVQQASIFDERLSLGSKDIFHLEGFITKV
MVVLEKNVS
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgtcattgtgggcagacaaatacaggccaaaaacgctagacgatctagactatcatggc
aagatttcgaatatgctgagttcattggccacgtcgggtgattttcctcatttattgttc
catggcccaagtggagcggggaaaaaaactagaatattggccacgctaagacaaatctat
ggtcccaacatagagaagttgaaagttgatccaaaggtgtttgtcacagcaactaagaga
aaattagagttcaatgtggtgtcgtctcctaaccatctggaaatcacacctagtgacatg
aacaacaacgatagggttgtaatccaagacctcttgaaagaagtcgcccaaactgaaacc
atcgattttacacacgttgctgaccacaagaacagattcaaagttgtcatcattaacgag
gcggaactgttaacccgtgacgctcaagcagctctgagaaggactatggagaagtactcc
gcaaatatcaggttggtgttggtgtgtaattctatatccagcatcattgagcctatcaag
tcaagaacgttactaattagagtggctgctcctacggatgaagaaatgggatcggttttt
gagaaagttctgagagatcaaccagaagtggccaagtcttttcctgctgatgagaccgag
agacaacagatttactccaagattgccaaagttacagatcacaatttaaggactggatta
ttgcttctggaagccttatactcttacaatccctccataaccaccaaaaccccaatgata
atgccagactgggaaaatgtcatcaagaaattagcaattggtatcgtcactgagaggaca
gtttccaagctacagcagagtagaactgacctttacgagttaatctcccattctattcca
gccaaacttatcctcaagaagttgaccatagaattctggcgtttggttgacgaagactcc
aagataaaagataaggacacagttaagatggatatagtccaacaggcttccatcttcgat
gagaggttgagtcttggatcaaaagatatcttccatctagagggtttcattactaaagtc
atggtggtacttgaaaagaacgtctcatag
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