KEGG   Komagataella phaffii: PAS_chr1-4_0556
Entry
PAS_chr1-4_0556   CDS       T01092                                 
Name
(RefSeq) Replication factor C
  KO
K10756  replication factor C subunit 3/5
Organism
ppa  Komagataella phaffii
Pathway
ppa03030  DNA replication
ppa03410  Base excision repair
ppa03420  Nucleotide excision repair
ppa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PAS_chr1-4_0556
   03410 Base excision repair
    PAS_chr1-4_0556
   03420 Nucleotide excision repair
    PAS_chr1-4_0556
   03430 Mismatch repair
    PAS_chr1-4_0556
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppa03032]
    PAS_chr1-4_0556
   03036 Chromosome and associated proteins [BR:ppa03036]
    PAS_chr1-4_0556
   03400 DNA repair and recombination proteins [BR:ppa03400]
    PAS_chr1-4_0556
DNA replication proteins [BR:ppa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    PAS_chr1-4_0556
  DNA Replication Termination Factors
   ELG1-RFC complex
    PAS_chr1-4_0556
Chromosome and associated proteins [BR:ppa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    PAS_chr1-4_0556
DNA repair and recombination proteins [BR:ppa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     PAS_chr1-4_0556
  Check point factors
   HRAD17(Rad24)-RFC complex
    PAS_chr1-4_0556
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA AAA_30 AAA_22 DUF4992 ABC_tran
Other DBs
NCBI-GeneID: 8197687
NCBI-ProteinID: XP_002490692
UniProt: C4QYT8
LinkDB
Position
1:2436199..2437308
AA seq 369 aa
MSLWADKYRPKTLDDLDYHGKISNMLSSLATSGDFPHLLFHGPSGAGKKTRILATLRQIY
GPNIEKLKVDPKVFVTATKRKLEFNVVSSPNHLEITPSDMNNNDRVVIQDLLKEVAQTET
IDFTHVADHKNRFKVVIINEAELLTRDAQAALRRTMEKYSANIRLVLVCNSISSIIEPIK
SRTLLIRVAAPTDEEMGSVFEKVLRDQPEVAKSFPADETERQQIYSKIAKVTDHNLRTGL
LLLEALYSYNPSITTKTPMIMPDWENVIKKLAIGIVTERTVSKLQQSRTDLYELISHSIP
AKLILKKLTIEFWRLVDEDSKIKDKDTVKMDIVQQASIFDERLSLGSKDIFHLEGFITKV
MVVLEKNVS
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgtcattgtgggcagacaaatacaggccaaaaacgctagacgatctagactatcatggc
aagatttcgaatatgctgagttcattggccacgtcgggtgattttcctcatttattgttc
catggcccaagtggagcggggaaaaaaactagaatattggccacgctaagacaaatctat
ggtcccaacatagagaagttgaaagttgatccaaaggtgtttgtcacagcaactaagaga
aaattagagttcaatgtggtgtcgtctcctaaccatctggaaatcacacctagtgacatg
aacaacaacgatagggttgtaatccaagacctcttgaaagaagtcgcccaaactgaaacc
atcgattttacacacgttgctgaccacaagaacagattcaaagttgtcatcattaacgag
gcggaactgttaacccgtgacgctcaagcagctctgagaaggactatggagaagtactcc
gcaaatatcaggttggtgttggtgtgtaattctatatccagcatcattgagcctatcaag
tcaagaacgttactaattagagtggctgctcctacggatgaagaaatgggatcggttttt
gagaaagttctgagagatcaaccagaagtggccaagtcttttcctgctgatgagaccgag
agacaacagatttactccaagattgccaaagttacagatcacaatttaaggactggatta
ttgcttctggaagccttatactcttacaatccctccataaccaccaaaaccccaatgata
atgccagactgggaaaatgtcatcaagaaattagcaattggtatcgtcactgagaggaca
gtttccaagctacagcagagtagaactgacctttacgagttaatctcccattctattcca
gccaaacttatcctcaagaagttgaccatagaattctggcgtttggttgacgaagactcc
aagataaaagataaggacacagttaagatggatatagtccaacaggcttccatcttcgat
gagaggttgagtcttggatcaaaagatatcttccatctagagggtttcattactaaagtc
atggtggtacttgaaaagaacgtctcatag

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