Komagataella phaffii: PAS_chr1-4_0594
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Entry
PAS_chr1-4_0594 CDS
T01092
Name
(RefSeq) General negative regulator of transcription subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAS_chr1-4_0594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppa03000
]
PAS_chr1-4_0594
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr1-4_0594
04121 Ubiquitin system [BR:
ppa04121
]
PAS_chr1-4_0594
Enzymes [BR:
ppa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
PAS_chr1-4_0594
Transcription factors [BR:
ppa03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
PAS_chr1-4_0594
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PAS_chr1-4_0594
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PAS_chr1-4_0594
Ubiquitin system [BR:
ppa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
PAS_chr1-4_0594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Rtf2
zf-RING_2
zf-CCCH_2
SET_assoc
CAF1A_dimeriz
zf-C3HC4
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
8197724
NCBI-ProteinID:
XP_002490733
UniProt:
C4QYX9
LinkDB
All DBs
Position
1:complement(join(2517564..2519466,2519573..2519622))
Genome browser
AA seq
650 aa
AA seq
DB search
MMNNDDTFISDQEEDVCPLCVEEMDISDKNFKPCPCGYQVCQFCYNNIRQNPELNGKCPA
CRRPYEDKNVEYKVISQEEWKLNQAKQARKEKERKQKEKEKKDAEQASRRHLAGMRVIQK
NLVYVVGLNPPVSPEELHNVLRSEKYFGQYGKILKIVINKRNRTNHHNHNPGFGVYVTFA
RKEDASRCIAAVDGSISDGRVLRAAHGTTKYCSSYLKGQNCPNPNCMFLHEPGEEADSYT
RQDLSTRQGLKMGESPRAAVHGLIPPPDMVPSPTIEEPVATERHVDTQVSDGSILPSTAS
WGKNTKASSTILPTFQSPSVDHSTLRNTSSFPSFAETQQLHANLHTPPAPKKKEKKSDAH
ESLDEVSKEILSAVENIEETVRTFFQSSNSGYQLKGEYKYRKRDIPRLFLSGFQQAPAFF
EESKDGNSEDMSHLVDLLLFSPGVKNYSFYRATPSQQQLQQQQQSQQVQQAQQVQQAQQA
QQAQQAQQVQQQAQQAQQQQAQQQQQQQQLQQQHIQQLQQIQQLQLAQQQQQQQQQRQQQ
EHLLQQLQQQQQQQYHQPQTQGQNFPQQYLMQQAQAQAQAQAQVLAHAQHDNSSNPMFTN
IREGSGVSATPPPPGLFSGVTNHTTETHNTPSSELLNQLMNGEGRNSINA
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataatgacgatacattcatatcggatcaagaagaagatgtttgtccgttatgt
gtggaagaaatggatatctcagacaaaaatttcaagccctgtccatgtggttaccaggtg
tgtcaattctgctacaacaacatccgtcagaatcctgaattaaacgggaaatgccctgca
tgtcgtcggccatatgaagataagaacgtcgaatacaaagtgatttcccaggaagaatgg
aaacttaatcaggctaagcaggccagaaaagagaaagagagaaagcaaaaggaaaaggaa
aagaaagatgcagagcaggcgtctcgacgtcatttggcaggcatgagagtcattcaaaag
aacctggtgtacgtggttggcttgaacccaccagtgtctcctgaggaactacataatgtc
ttaagaagtgaaaaatattttggtcaatacggtaagattctcaaaattgtcatcaataaa
agaaatcgcacaaatcaccacaatcataacccaggcttcggtgtttatgtgacttttgct
aggaaggaagatgcttcaagatgcatagcggcggtagatggttctatctctgacgggaga
gttttaagagctgcccatggtaccacgaagtactgttcttcttatttaaagggtcagaat
tgtccaaaccctaattgtatgtttttgcacgaacctggtgaagaagccgactcttacaca
agacaggatctatctactagacagggtttaaaaatgggtgaaagtccaagagctgctgtt
catggtcttattccacccccggacatggttccctcaccaactattgaagaacctgtcgct
acagaacgtcatgtggatacacaagtatccgatggatctattttaccttctactgcttcc
tggggaaagaataccaaagcgtcttctacaattcttccaactttccaatctcctagtgtg
gatcactcaacattgaggaataccagctcgttcccaagttttgcagagactcagcaactt
catgcaaacttgcatactccgcctgctcccaaaaagaaggaaaagaaatcggatgcacac
gaatccttggatgaagtatccaaagaaattctatctgctgtcgaaaatattgaagaaact
gtcagaactttttttcaatcatcaaattctggatatcaattgaagggagaatataaatat
agaaagagggatattccgagattatttttatctggtttccagcaagccccggcttttttc
gaagaaagtaaggatgggaattcggaggatatgtcccatttggtggacttgttgctgttt
tctcctggagttaagaactatagtttctacagagctactccaagtcaacagcagttacag
cagcagcagcaatctcagcaggtgcaacaggcacagcaagttcaacaggctcaacaagct
cagcaggcccagcaggctcagcaggttcaacaacaggctcagcaggcccaacagcagcag
gcacagcaacagcaacaacagcaacaattgcagcagcagcacatccaacaattgcaacaa
atacagcaactacaacttgcgcaacagcagcagcaacagcaacagcagcgtcaacaacag
gaacaccttcttcagcaattgcagcagcagcagcagcaacaatatcaccaacctcaaaca
caaggccaaaatttcccacaacagtacttgatgcaacaggcccaagctcaggcccaagct
caagctcaagttttagcccatgctcagcatgacaactcatccaatccaatgttcactaac
atcagagaaggatctggggtctcagctacacctccacccccaggattgtttagtggagtg
accaatcacactacggaaactcataacactccatcatctgaactattgaaccagctgatg
aacggggagggtagaaactcgatcaatgcttag
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integrated database retrieval system
