Komagataella phaffii: PAS_chr1-4_0634
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Entry
PAS_chr1-4_0634 CDS
T01092
Name
(RefSeq) Protein that forms heterodimers with Msh3p and Msh6p
KO
K08735
DNA mismatch repair protein MSH2
Organism
ppa
Komagataella phaffii
Pathway
ppa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PAS_chr1-4_0634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppa03400
]
PAS_chr1-4_0634
DNA repair and recombination proteins [BR:
ppa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
PAS_chr1-4_0634
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
8197842
NCBI-ProteinID:
XP_002490775
UniProt:
C4QZ21
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All DBs
Position
1:2596878..2599673
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AA seq
931 aa
AA seq
DB search
MSSIRPELRFQDKSDETGFYRKYLKLGEKPDRTVWAVDRGDYYTVLDQDAILVAELIYKT
NSVVKTSNATLASGQHKEIKYVTLSPQVFVNFLKMCVLDIGHKIEIYDKTWTLSKTASPG
NLAEVDHLINSSDLNTQALIASLRLSGKNIGLSYIDSVNKIIGVVEFVDNDLFSNVESAM
IQLGIKECLLAGNTSKAADPDYVKLEQVMNRCDVVVTHVKNSDYSTKNIEQDLVRLTGDD
LVFSTNDVHSLDQALGCVNSLVLYLNLLNSDDSGWTLELYNLSQYLRLDYSAVKSLNLFP
SVSNNNQNSMNKNNSLFGLLNHCKTVGGSRLLSQWLKQPLLDIKAITERQEIVQLLVDDM
TMRAGLQEQFLNSVPDISKLTKKLASRKAKLDDVVRIYQLCTKLPDLLGLLIAEDKENTR
ASELIDEWFINPLQKICSSLLKFQELVETTIDLDALENATSISSSMVSVNPQFDENLVRV
SKELEEMNSQMQQEHEFASDDLNMEMVKKLKLENHHVHGWCFRLTRTDSSVIRGNKRYRE
LQTVKAGVFFTTAKLSELASNVAELTEEYSKIQSGVVKEIIEISSTYSPILVQLSAVISK
LDVLTSFAHVSSFAPIPYQRPKLYGLDDSSRKLKLIGARHPCLETQDDLTFIANDVVLTK
DESEFAIITGPNMGGKSTYIRQVGVIALMAQIGCFLPCDEAEICVFDSILARVGASDSQL
KGVSTFMSEMLEMSSILKTATSNSLVIIDELGRGTSTYDGFGLAYGISEYIANKLHSFTL
FATHFHELTKLSELIPTVINLHVVAQTSTDGKDDDITLLYKVKPGISDKSFGINVAEIVK
FPQKIINMAKRKAQELDDDAVYESAAKKIKATDEEVEAANELLKDLLKQWKSEADLSANS
DEIVSKLKDLMGNEFKDKIAGNSLLKEMLTL
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctataagaccagaactacggttccaggataaatccgatgagacagggttttac
cgtaaatatctcaagttgggcgaaaagcccgatagaacagtgtgggcagtcgaccgtggt
gactactacacggtattggaccaggatgcaatactagtggcagagttgatatacaagacg
aattcagtggtgaaaacaagcaatgcgactctggcttcaggccagcataaggaaatcaaa
tacgtcacgctatcgcctcaagtattcgtcaattttctaaagatgtgtgttctagacatc
ggccataagatcgagatctacgataaaacatggacgctttccaagactgctagtccagga
aatctagctgaggtagatcatttgatcaattcctctgatttgaacacccaggctttgatt
gcctctcttcgattgagtggtaagaatattggactgtcctatatcgactctgttaacaag
atcattggggtggtggagtttgttgataatgatctattctccaacgtggagtctgcaatg
atacaattgggcatcaaggaatgtcttctagctggaaatacctcaaaagctgctgatcca
gactatgtgaaattggagcaggttatgaatagatgtgacgttgtagtaactcatgtcaag
aattcagattattccaccaagaatattgaacaagatcttgtcagactaaccggcgatgat
ttggtgttttccaccaacgatgttcattctttggatcaagctttgggctgcgtgaactct
ttggtactctaccttaatcttttgaatagtgatgatagtggctggactctggaactgtac
aatctgtctcaatacttaagactagactattccgctgtcaaatcattgaatttattcccc
tctgtgagcaacaacaatcaaaacagtatgaacaagaataattccctttttggtcttcta
aaccattgcaagactgttggagggtctaggctactttcgcaatggcttaaacaacctctt
ttggacattaaagctattacagagcgtcaagagattgttcagcttctcgtggatgatatg
acaatgagagccggtctccaagagcaattcctcaactctgttccagatatctcaaaactg
actaaaaaactggccagtcgtaaagctaagttggatgatgtggttagaatctaccaacta
tgcacgaaactgcccgatctattaggtcttctaattgcagaagataaagagaataccaga
gcctcggagttgattgacgaatggtttatcaaccctttacagaagatttgctcgtcctta
ttaaaatttcaagagttagttgagactacaattgacctggatgcattggaaaatgccact
agcatttccagttcaatggtttcggtgaaccctcagttcgacgagaatctcgtaagggtg
agtaaagaactagaagagatgaactctcaaatgcaacaagagcatgaatttgcaagcgac
gaccttaatatggagatggtaaagaagcttaaactagagaaccatcatgttcatggatgg
tgttttagactcactagaacagactcgtcagtaatcagaggaaacaaaagatacagagag
cttcaaacagtaaaggctggtgtttttttcaccactgccaaactatctgaattagcctct
aacgttgcggaactaacagaagaatacagcaaaattcaatcaggtgtcgtcaaggagatt
attgaaatatcatccacttacagtccgattttggtacagttatctgctgttatatcaaag
ctggacgtattgacatccttcgcccacgtttcttcgtttgctccaatcccataccaacgt
ccaaagctttacggtttagatgatagctcgagaaagctaaagttgataggtgcaagacac
ccatgtttggagacccaagatgatctgacatttattgccaatgacgttgttttgaccaaa
gatgaatccgagtttgccattattacaggtcctaatatgggaggaaaatccacatatatt
aggcaagttggagttattgctttgatggcccagattggatgtttcctcccttgtgatgag
gccgaaatctgtgtatttgattcgatcctggctcgtgttggagcgtccgattcccagctg
aagggagtatctacgtttatgtctgagatgctggagatgagttctattttgaagactgca
acgagcaactccttggtgattatagatgagttaggaagaggaacttctacctacgatggg
tttggcttagcatacggcatcagtgaatatattgctaacaaactgcacagtttcactctt
tttgctactcatttccatgagttgacaaaattgagtgagcttattccaacggttattaac
ctgcacgtggttgcacaaacatctacagacggtaaagacgacgatattacattgctgtac
aaagttaaaccgggaatatctgataagtcttttggaatcaacgtggcagaaatcgtcaaa
ttccctcaaaagatcatcaatatggctaagcggaaggcacaagaactggacgatgatgca
gtgtatgagtctgctgcgaagaagataaaggccactgacgaagaagtcgaagcagccaac
gagcttttgaaggacttgctgaaacaatggaaaagtgaggctgatctctccgccaatagt
gatgaaattgtatccaaacttaaagatttgatgggtaacgagttcaaggacaagattgca
ggaaactcattgttaaaggagatgctgaccttataa
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