Komagataella phaffii: PAS_chr1-4_0661
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Entry
PAS_chr1-4_0661 CDS
T01092
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr1-4_0661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppa03041
]
PAS_chr1-4_0661
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PAS_chr1-4_0661
Spliceosome [BR:
ppa03041
]
Complex C
Other components
Step II factors
PAS_chr1-4_0661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
Flavi_DEAD
ATPase
ABC_tran
PhoH
SLFN-g3_helicase
AAA_30
T2SSE
AAA_16
Motif
Other DBs
NCBI-GeneID:
8197190
NCBI-ProteinID:
XP_002490323
UniProt:
C4QXR9
LinkDB
All DBs
Position
1:complement(1783192..1786095)
Genome browser
AA seq
967 aa
AA seq
DB search
MVIKPKTNNRRKISIDFNDDEGSSSLDHPGTRESPSTSSTSSPTRPVFKKIKKQEAQRIK
GFPSKHQSQVNKLTSLNNVKNNGDGANRPSTMLKPKLSLQELASKEKQTYKNDNGYQQGS
LLNKEDEDNDNFSDTSLDREWYTNERANHYEDLELETNNKATRNRTSLDTFDPFEDDPED
YENHRQQQIVSHHLIPPFLEDEQIIANQKAEISVIRDPEGHLAAAARRGSNLVNERRVQS
VIMKKNNEVSAVKGTKLGNVMGIKDKEEKIEHKNFIEAMEDSSSPLDIAEQRRCLPAFTV
REDLIRTIRENQIVVVIGETGSGKTTQLTQFLYEEGFYKRGIIGCTQPRRVAAMSVAKRV
SEEMGVKLGNEVGFTIRFEDRTSPRTMIKYMTDGVLLRETLLDSGLEKYSCIIMDEAHER
SLNTDILLGLFKKILTKRRDLRLIITSATMNASRFSEFFGNADTFTIPGRTFPVDIQFSK
YPVADYVDAAIKQVLKIHYGKKPGDILVFMTGQEDIEATCQVLQERIEEIEEDAENKNPL
SILPIYSSLPADLQAKVFGRSEVRKCIVATNIAETSLTVDGIVFVVDAGLCKLKVYSSKL
GMDILQLAPISFAQANQRSGRAGRTGPGVAYRLYTLTEAEKEMYVQPIPEIQRTNLANTL
LLIKSLGVDNLLDFPFIDPPPHATIYSSLYDLWCLDAIDNLGALTDLGHKMTSFPMEPVL
SKMLIKSHEFKCSTEMCIIVAMLSVPNVFYRPKERQKESDRSRERFFIPESDHLTLLNVY
NQWLNHRNSARWCVQNFLHEKSLRRAQEIELQLQSIMMQQGMACRSIGRQWDPIQECICS
CLFVNAARFKKFGEYTNLRSVMSMVLHPTSSLYGTADLPEYVVFQELLLTSREYMNVVTA
VKPEWLAKYGSVFYSARSDHEAVLSRLKEAMDDAKKKWNQLETSKTQKVVTNVQPKGQIG
IRRPRRV
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggttataaagccaaaaaccaataacagaagaaagatcagtattgattttaacgacgat
gaagggtcaagttcattagatcacccaggcacaagggagtcaccgtctacctcatctacc
tcatcgcctacaagaccagtgtttaagaagataaagaaacaagaagcgcaaaggatcaag
gggttccccagtaagcatcagagtcaggtaaataagttaactagcctgaataacgtgaag
aataacggagatggggcaaatagaccctctaccatgttgaagccaaaactgtcgcttcag
gaactggcttcaaaagagaaacaaacttataagaatgataatggataccaacagggctca
cttttgaataaagaagacgaggacaatgataacttttccgacacctctttggatagggaa
tggtacactaacgagagagcgaatcactatgaagatctagaactggagactaacaataaa
gccaccaggaatagaacttctctagatacgtttgacccctttgaagacgatcctgaagac
tatgaaaatcatcgacaacagcaaattgtatcacatcatttgataccccctttcttagaa
gatgagcagatcattgccaaccaaaaggcagaaatatcagttatacgagaccccgagggt
cacctagctgccgcagctaggagaggtagcaatctagtgaatgagcgaagagtccagtca
gttatcatgaagaagaacaatgaagtcagcgctgtcaagggtacaaagctgggaaatgtc
atgggtattaaagacaaagaagagaagatagaacataagaactttattgaagcgatggaa
gattcaagctctcctcttgatatcgcagaacaaagacgttgtctgcctgcattcactgtt
cgtgaggatttgattcgaaccataagagagaatcagatagtagtcgtaattggtgaaaca
ggtagtggtaaaactacgcaattaacacagtttttatatgaggaaggattctataagaga
gggataattggttgtactcagcctagaagggtggctgccatgtctgttgctaaaagagtc
agcgaagagatgggagtcaaactcggaaatgaagtgggtttcactatcagatttgaggac
aggacgagccccaggacaatgatcaaatatatgactgatggtgtactccttcgtgagaca
ctgctagattctggactagagaaatactcctgtattatcatggatgaagctcacgagaga
tcgttgaatactgatattcttctcggattattcaaaaagatcctgactaagcgaagagat
ctaagactaataataacttcagctactatgaatgcttccagattctccgagttttttgga
aatgctgacacttttactattcctggaagaacgtttccggtagatatccaattctccaaa
tatccagtagcagactatgtcgatgcggctataaagcaagtactgaaaattcattatggt
aaaaaaccaggtgatattttagtattcatgactggtcaggaagatatcgaagcaacttgt
caggtactacaagaaagaatagaagagatagaagaagatgctgaaaacaagaatcctctg
tcaatactacccatatattcttctttgccagcagatctgcaagctaaagtgtttggaaga
tctgaagttcgaaagtgcattgtggcaacgaatattgccgaaacttctctgactgtcgat
gggattgtatttgttgtagatgcggggctctgtaagctgaaagtttacagttcgaagctg
gggatggacatacttcaattagcacccatatcatttgctcaagcaaaccaaagatctggt
agagcaggcagaacgggaccaggtgtggcatatcggctttatactctaacagaggcagaa
aaagagatgtacgtacaaccaattccagaaattcaaagaaccaatctagctaacacgttg
ctactgattaaatcattaggagtagataatttgttagactttccattcattgatccacct
ccccacgccacgatctattcttcattgtatgacttgtggtgtttagatgccatagataat
ctcggtgcacttacagacttgggtcataaaatgacctccttcccgatggaaccagtgctt
tccaaaatgttaatcaaatctcatgagttcaagtgttctactgagatgtgtataattgtt
gccatgctgtccgtccccaatgtgttttatcgaccaaaggagagacaaaaagaaagtgac
agaagtagggaaagattcttcattcctgagagcgatcatcttactttactgaatgtttac
aaccagtggttgaaccacagaaactcagctcgttggtgcgtccagaactttcttcatgag
aagtctttaagacgagctcaagagatagaacttcagttgcaatcaatcatgatgcagcaa
ggcatggcttgtcgaagcattggcagacagtgggatccgatacaggaatgcatttgcagc
tgtttatttgtcaatgcagctcggttcaaaaagtttggggaatacacaaacctaagaagt
gttatgtcgatggtccttcatccaacttccagtctctatggtacagctgatttacctgaa
tatgtcgtgtttcaagagttgctgttaacatccagagagtacatgaatgtggttacagcc
gtgaagcctgaatggttagcaaaatacggatcggttttctactccgctaggagtgaccac
gaagcagtattgtcccgtctcaaagaagctatggacgatgcgaaaaaaaaatggaatcaa
ttagagacttccaaaactcagaaagtcgttaccaatgttcaacctaaaggacaaatagga
atacgcagaccccgaagggtttga
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