Komagataella phaffii: PAS_chr2-1_0043
Help
Entry
PAS_chr2-1_0043 CDS
T01092
Name
(RefSeq) Subunit of TFIIH complex, involved in transcription initiation, similar to 34 kDa subunit of human T
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
ppa
Komagataella phaffii
Pathway
ppa03022
Basal transcription factors
ppa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PAS_chr2-1_0043
09124 Replication and repair
03420 Nucleotide excision repair
PAS_chr2-1_0043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr2-1_0043
03400 DNA repair and recombination proteins [BR:
ppa03400
]
PAS_chr2-1_0043
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PAS_chr2-1_0043
DNA repair and recombination proteins [BR:
ppa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PAS_chr2-1_0043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Rad50_zn_hook
DUF7385
Motif
Other DBs
NCBI-GeneID:
8198162
NCBI-ProteinID:
XP_002490923
UniProt:
C4QZG9
LinkDB
All DBs
Position
2:join(75124..75178,75319..76250)
Genome browser
AA seq
328 aa
AA seq
DB search
MDAIADRAFQEKQHNVSQDETPSLLAVVIDTNPLEWTKLKGVICLKELCKSVLVLLNAHL
SLNSGNRVAVLTSSSLNSGPKFLYPDPNDKTYEKRESLLSSDIHRQFKFVDQKIIQELQI
LLDNEPLNPENQELKGSIAGAMSMALSYINRLTNIEPESTGNTLRAKMLVISISDDSTQQ
YVPFMNCIFSAQKMKVSIDVCKMGPDSSFLQQASDVTNGVYMLIKNVHGLIQYLTTALFI
DPSLRPIMVLPTNSDLDFRASCFVTNKVIDIGYVCSVCLCIFSIIPRNNVCPTCQSKFDD
AVVKKLRQKPIVIPLQKKKKLEDGVQRT
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggatgccattgcagatagggccttccaagagaagcagcataatgtgtctcaagatgaa
actccttcgttgctagcagttgttattgataccaatccacttgaatggacaaagctaaaa
ggtgtgatctgtttgaaagagctttgcaaatcagttttggttcttttaaatgcacatctc
tctttgaacagtggaaatagggtggcagttctcacatcttcttccctcaactcgggacca
aaattcctgtatccagatccaaacgataagacttacgaaaaaagagagtctttactatcc
tctgacatacatcggcaattcaaatttgttgaccagaaaataatacaagaactacagata
ctacttgataacgagcctttaaatccagaaaaccaggaactcaaaggaagcatagcaggt
gctatgtctatggcattaagctacataaatagacttaccaacatcgaaccagagtcgaca
ggaaacacactaagagctaagatgctggttataagtataagtgacgactccacccaacaa
tatgtgcctttcatgaactgcattttttctgctcaaaagatgaaagtttccattgacgtc
tgtaagatgggacccgattccagttttctccaacaggcatccgatgtcactaatggcgtt
tatatgctcatcaaaaatgttcatgggctcatacagtacctaaccactgcacttttcatt
gacccctctctgagaccaataatggtccttcctaccaattcagatctcgattttagagcg
tcatgttttgtgactaataaagtgatagatattgggtatgtgtgcagtgtgtgcttgtgt
attttcagcatcattccccgaaataatgtctgcccaacttgccaatcaaagttcgatgac
gcagtagtgaaaaagctacgccaaaaacctatcgttattccattacagaaaaagaaaaag
ctggaagacggagtgcaaaggacgtga
DBGET
integrated database retrieval system
