Komagataella phaffii: PAS_chr2-1_0222
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Entry
PAS_chr2-1_0222 CDS
T01092
Name
(RefSeq) U3 snoRNP protein, component of the small (ribosomal) subunit (SSU) processosome containing U3 snoRN
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
ppa
Komagataella phaffii
Pathway
ppa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PAS_chr2-1_0222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppa03009
]
PAS_chr2-1_0222
Ribosome biogenesis [BR:
ppa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
PAS_chr2-1_0222
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_1st
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
WDR55
KNTC1_N
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
8198604
NCBI-ProteinID:
XP_002491112
UniProt:
C4R008
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Position
2:complement(421264..423555)
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AA seq
763 aa
AA seq
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MTVGSWTFTEHGGGRLIERGSALSTDGRFMFVVSSDSLRVFNVDNRIGVRNVKFSEMTVR
GDFPELDITKKLVRMLVSSDILHFVFSDGHHLWLNWKEFMSGDLELKVEKFQVPGTVLDV
LHYKDEFYTIIGKRNKGHNRQVVKDGEVLYTVESVRLHNKSLYDRKIVFLTTDHKVTVID
LETNTSSDVKFSYRRDVMSVAVAEKSDMVALGTATGIIHLVESNTERLLKWHIDQVKAME
FTVDEMYLVSGGVEKVLVFWNLSTGKQQFLPRLNGVIVDIDLSNPELYTLTLISNSIVEF
LVISSIDLASRISVASVKNRFKGLNKKKSTDKDVTKLGFDITTDFEVVKDQLFFPLRSQI
QVYDYIRNEQQALQTVAPVSQIGKVRSELAIQDPKVKCFAVSENGKWMCTFDSVPTPSAD
ALLSTGEQTYSLKFWKHVPGDAMYGSWELTTKIIDPHAQKPVSEIIPAPSSLYGGDAFVS
VDGKGNVRLWRPRALDPNAVAAANNKALQHTEWTLRKAFSGFESSSESVHASWSPDGSII
ALSHETNVLLLEVNTSQMDPIPLPSLVQNRITGLKFVDDGNLLLLTKRSLANFNILTWSK
TPLNLSLDFPAKGQSLVAVDQAKRIIAVVLNYYNHDKDIQSKVYLFKADSLVPIGEVSLS
KGISGIRYSSYNDTFVVVDTSSMIFTLSNKDLPKFNQDSDYVTEINTLVGIAQSNHKVLN
NVENSMDLLTESVMLNANSFDKILENTEGLTVTNLFERVLKVI
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgggatcctggacattcaccgagcatggtggtggtagattgatcgaaagaggt
agtgccttgagtacagatggaaggttcatgtttgttgtctcctcggattctctacgagta
ttcaatgtggataatcgtattggggttcgaaatgtcaagttctctgagatgaccgtgcga
ggtgactttccagagctggatattaccaagaaacttgtcagaatgcttgtgagctccgat
atattgcattttgtgttttcagatggtcaccatctttggttgaactggaaagagttcatg
tcgggtgatctagaattgaaagttgaaaaatttcaagtccctggaactgtcctggatgtc
ctccactacaaagatgaattttacaccatcattggcaaacgtaataaaggtcacaacaga
caagttgtcaaggatggagaggtactatacactgtggaatccgtccgtctgcataacaag
tcattgtacgacagaaagattgtctttttaaccactgatcataaggtcacagtgatagac
ctggagacaaacacctcttctgacgtcaagttctcgtatagaagggacgtcatgtcggtg
gctgttgcagaaaaatcggacatggtcgcattaggaactgcaactggtataattcatttg
gtcgaatcaaacacagagagactgctcaaatggcacattgatcaagtgaaggctatggaa
tttaccgtggatgaaatgtacctggtttctggaggtgttgagaaggttcttgtgttctgg
aacctttccacgggtaagcagcagttcttgccaaggctgaatggagtaattgtcgacatc
gatctttccaaccccgaactttacacactcacgttgataagcaactccatcgtggagttt
ttagttatcagttccattgatttagcatccagaatctccgttgcgagcgtcaaaaaccgc
ttcaaaggtcttaacaagaaaaagtcgacagataaagatgttaccaaactcggttttgat
attaccacggactttgaagtggtgaaagaccaactattttttccactccgatcccaaatt
caagtttacgactatatccgtaatgagcagcaagccctacaaacagttgccccagtaagt
caaatcggtaaggtaagaagtgaactagccatccaagatccaaaagtcaaatgctttgcc
gtcagtgaaaacggaaaatggatgtgtacctttgattctgttccaaccccctctgctgat
gcattgttgtctactggagagcaaacatattctctgaagttttggaaacatgttccagga
gatgctatgtacggtagttgggagttaaccaccaaaattattgatccacatgctcagaag
cctgtctctgagattatccctgcccctagttcgttatatggaggagatgcgtttgtctca
gtcgatggtaagggaaacgtacgtttatggagacccagagcattagaccctaacgcagtt
gccgctgccaacaacaaagctttacagcatacagagtggaccctgcgaaaggcattttca
ggatttgagtcttcatctgaatctgtgcatgcctcatggtccccagatggctccatcatt
gcactcagtcatgagacgaatgttttactattggaggtcaacacatcccagatggacccc
attccacttccctctttggttcagaaccggattacgggtctcaaatttgtagatgacggg
aatttacttcttctgaccaagaggtctctagcaaatttcaacatattaacctggagcaaa
actccactgaacctcagtttagatttcccagctaagggccaatcattagtagctgtcgac
caagccaaaaggattatagccgttgtgcttaactattataatcacgataaagatatccag
tccaaagtttacctatttaaagcagatagtttggtgccgataggagaggtcagtctttcc
aaaggaatatcagggattagatactcatcttacaatgacacatttgttgtagtagacact
agttcgatgatttttaccctttccaacaaagatctacccaagttcaaccaggattcagac
tacgtcaccgagattaatactctggtgggtattgctcagtctaaccacaaggttctgaat
aacgttgaaaatagcatggatttgttgacagaatctgtgatgctgaatgccaactctttt
gataagatactagaaaacacagaaggtttgacggtgacgaacttgtttgagcgtgttttg
aaggtcatctag
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