Komagataella phaffii: PAS_chr2-1_0232
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Entry
PAS_chr2-1_0232 CDS
T01092
Name
(RefSeq) Cleavage and polyadenylation factor I (CF I) component involved in cleavage and polyadenylation of M
KO
K14408
cleavage stimulation factor subunit 3
Organism
ppa
Komagataella phaffii
Pathway
ppa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PAS_chr2-1_0232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr2-1_0232
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
PAS_chr2-1_0232
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_17
HAT_Syf1_M
EntA_Immun
Motif
Other DBs
NCBI-GeneID:
8198781
NCBI-ProteinID:
XP_002491122
UniProt:
C4R018
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All DBs
Position
2:438097..440043
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AA seq
648 aa
AA seq
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MADNTKKRRLSNDVIGQLQDDLKQSPLNVNTWDTLIDKVIAKDKHEQVIQVFEDCLVYFS
YLGYFWNRYATYLLERLEFDKTKEIFNRCLPKVANVELWRSYIRYVRRTNSIITGGEEAR
RLIIKSFEISLENIGMDYNSDVLYDDYIEFLNEWQPINPNERNHRNDLLRGLYRSLIKSP
VKDLERYWTDYTNFENEANPNKQISRKLVNEISGEYMNTRIKLSDLVNKIKGIPKADRYL
MNNEFDFSKVGSLSLVIAWSEWERTNPFNLEKNVVKKRVNLSFQKSLQLYPFIPKLWYNY
FTYLMDQQQDPSTEATNGESNQAQQAQELIVTVKQAISLNPTSFILSTLLSDLLQSDGKD
VDTIKKVYLDLIEALQKYYNTDQVEDSIVNRSITEAYILLMNMLKSSKDGRSEIRKVFSQ
ARKFENLTYHCYVQNAYLEYYTFNDVKVAKKIFDLAFKKFNDNISFLNYYLNFVISIKDF
SQAKVVYETFIKSNQDSLDREKLFKVYQSFMQFESQFGDPISLRNLEKRLSNQFGLDSLY
LAMINRLSPFCSPSNLLELEPPFNSVKQIDEKQGSLDSILSTPVSASTSIEDPTNRPKNG
PKKQKIDDNLVIKDDIYNLLRILPKKTFFKDVPILNEKLVEVLTSLNL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaacaccaagaagagaagactcagtaatgatgtcattggacaactgcaggat
gatcttaagcaaagccccttgaacgtcaatacctgggacacgcttattgataaagtcatc
gccaaagacaaacatgaacaagtcatccaggtgttcgaagactgtctggtgtatttctcc
tacttgggatatttttggaacaggtatgctacatatctgctggagaggctggagtttgac
aagaccaaagagattttcaacagatgtttgcccaaagtggcaaacgttgagttatggcga
agttacattagatacgttagacgaaccaatagcataataacaggcggtgaagaagctcgg
agattgatcataaaatcctttgagatcagtcttgagaatatcggaatggattataatagt
gacgttctctatgatgattatattgaatttcttaacgaatggcaaccaataaacccaaat
gagcgaaaccacaggaacgacttgctaagagggttgtataggagtttaatcaagtcacca
gtcaaagacttggagagatattggacagattataccaattttgagaatgaagcaaatcca
aacaagcaaatcagtcggaaactggtgaatgaaattagtggtgagtacatgaataccaga
ataaaattgagtgatcttgtcaataaaattaagggaattcccaaagccgatcgatatctc
atgaataacgaatttgatttctctaaggtaggatcactttcgttggtgattgcgtggtcg
gaatgggaaagaaccaatcctttcaatctagagaagaatgttgtaaagaaaagagtaaac
ctatcttttcaaaaatctcttcaactatatccattcattcctaaattgtggtacaattac
ttcacctacctcatggaccagcaacaagatccctcaactgaagctaccaatggtgaatcc
aaccaagcacaacaggctcaagaattgatagtcaccgttaaacaggcaatttctttgaat
ccaacaagtttcatccttagtacgttattatcggatcttttgcaatccgacggtaaagat
gtggatactattaagaaagtttatttagatctcattgaagcattacaaaaatattacaat
accgatcaagtggaagacagtatagtgaatcgatcgatcactgaagcctatatcctgttg
atgaacatgcttaaatcatccaaggatggtagatcggaaatccgtaaagttttctcccaa
gctagaaaatttgaaaatttaacgtatcattgttacgtccaaaatgcttatctagagtac
tatacttttaatgacgtgaaagttgctaagaaaatctttgacttggccttcaaaaagttt
aacgacaacattagtttcctcaactactatctcaactttgtcatcagcatcaaggatttc
agccaagcaaaggtcgtatacgagacatttatcaaaagcaatcaagattctctagataga
gagaagttatttaaagtctatcagtctttcatgcaatttgaaagtcaattcggggatccg
atttcccttcgaaacttagagaagagactatccaaccaatttggtttggactccttatac
ttagctatgatcaaccgactctccccgttctgtagtcctagcaatctgttggaattagaa
ccgccttttaacagtgttaaacagatcgacgaaaagcaaggatcactagattctattctt
tcgacgccagtatccgcatcaacatctatagaggatccaactaatagaccgaagaacggt
cccaagaaacaaaaaatcgacgacaatctggtaataaaggatgatatctacaatctgttg
aggatacttcccaaaaaaacgttcttcaaggacgttcctatactcaacgagaaacttgtg
gaagtacttaccagcttgaacctttga
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