Komagataella phaffii: PAS_chr2-1_0267
Help
Entry
PAS_chr2-1_0267 CDS
T01092
Name
(RefSeq) Conserved 90S pre-ribosomal component essential for proper endonucleolytic cleavage of the 35 S rRNA
KO
K14558
periodic tryptophan protein 2
Organism
ppa
Komagataella phaffii
Pathway
ppa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PAS_chr2-1_0267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppa03009
]
PAS_chr2-1_0267
Ribosome biogenesis [BR:
ppa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
PAS_chr2-1_0267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
ANAPC4_WD40
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Utp12
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_HPS5
PROPPIN
WDR90_beta-prop_4th
Beta-prop_DCAF4
eIF2A
Beta-prop_WDR19_1st
Beta-prop_SPT8
Ge1_WD40
Beta-prop_Nup120_160
Beta-prop_VPS8
Beta-prop_DCAF12
Beta-prop_WDR19_2nd
Beta-prop_EIPR1
Cytochrom_D1
WD_LRWD1
Beta-prop_WDR35_2nd
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
8198816
NCBI-ProteinID:
XP_002491159
UniProt:
C4R055
LinkDB
All DBs
Position
2:502751..505384
Genome browser
AA seq
877 aa
AA seq
DB search
MKSDFQFSNLLGTVYRQGNLVFINDGNTLISPVGNRVSVFDLINNKSFTFPYEHRRDVAA
ITVNKQGTLLMSVDEHGRAILVNFKARIVLHHFNFKSPVKAIEFSPDGHYFAVGCGKILQ
IWRTPNVLEDKQFAPFVRHAYYTGHYDDITSVSWSGDSQFVLTTSKDMTTRLYGVDRDRM
DEVRMTLGGHRDYVVNAFFDEAQEVIYTVSKDGALFRWEYTSDPKSKEDEYEEEDEEDRS
TDEDGILQKPKKPESWRIVARHYFFSHSKLKCAAFHPKSNILVVGFGNGEFRLYELPTFT
LIQQLSMGQNSVNTVSINASGEWLAFGSSTLGQLLVYEWQSESYILKQQGHFDAINALTY
SPDGSRVVTAADDGKIKIWDVLSGFCLATFEEHSSAVTSVRFAKRGQVLFSSSLDGTVRA
WDLIRFRNFRTFTAPERVQFGCLAVDPSGEVVCAGSLDDFQIHVWSVQTGALLDSLAGHE
GPVSCLSFGQEGEAATTLASASWDKTIRVWNIFGRSQQVEPFEVYSEVLAIDMRPDGKEV
AVSTLNGQILFWNVESGNQTNFIDAKRDIQVGRYSDDRFEAKNSKRGKCFSTISYSFDGL
SLIAAGDNNSICLYDVKNSVLLRKFTVSLNMNLEGTLKKLNSKNLIEGGPIDLLDRDGEN
SDYEDRVDLKLPGSHRGDPSVRNIKAAVRVTSIAFSPGASSFAAASTEGLLIYSVDDSVN
FDPFDLDIDITPASCLEMLEEKEFLIAVVMSFRLNERYLIHRIYESIPLNEIDLIVADLP
KVYVERFLRFIGELSLESQHIEFNLIWIKSILAAHGKYISAHKFEFSVATRMIQRFLARI
AKDVVKTSVRNGYLAEFLLDTRTQQDSIRIEEEKLTL
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctgatttccagttttctaacttgttaggaactgtctaccgacaaggaaatttg
gtattcatcaatgatggtaacaccctcatttctcccgtgggtaatcgtgtttcggtcttt
gatttgatcaataacaagtcctttacctttccatatgaacatagaagggacgttgcagca
attacggtgaataagcaaggtacgcttttaatgtctgtagacgagcacggaagggctata
ttggtaaactttaaagctagaattgttttgcatcatttcaactttaagtctcccgtaaag
gccattgaattttcacccgatggacactatttcgcagtaggatgtggcaaaatcttacaa
atatggagaactccaaacgttctggaagacaagcagtttgctccatttgttcgtcatgcg
tattacacaggccattatgatgacattacttccgtctcgtggtctggagattcgcagttt
gtcctcacgacgtctaaggatatgacaacgcggctctatggagtagatagggatcgcatg
gatgaggtcagaatgaccttgggtggtcatagagactatgtggtcaatgcattttttgat
gaggctcaggaggttatctacacagtcagtaaagatggagctctcttcaggtgggaatac
acatctgatccaaagagtaaagaagatgaatacgaggaagaagacgaggaagataggagt
acggatgaagacggaatattacaaaaaccaaaaaaaccagagtcatggaggattgtggcc
agacattacttctttagtcattccaaattgaagtgtgctgcattccatcccaaatccaat
attctcgtggtaggttttggcaacggagagttcagactctacgaattgccaacgttcaca
ctaatccagcaactttccatgggtcagaattctgtcaacacagttagtatcaatgcttct
ggtgaatggttagcctttggctctagtaccttaggacaattgttagtatatgagtggcag
tcagaatcttatatcctcaagcagcaaggccattttgacgctataaacgctttgacatat
tctcctgacggctctagagtagtaacggcagcagatgatggtaaaatcaaaatttgggat
gttctgtcgggtttctgtctggcaacatttgaagaacattcaagcgctgtcacttcagtc
agatttgctaagcgaggtcaagtactgttttcatcctccttggatggtacggtcagggct
tgggatctgatcagatttcggaactttagaaccttcaccgctccagaaagagttcagttt
ggatgtcttgcggtagatccaagtggtgaagttgtttgcgccggttctttggacgatttt
cagattcatgtttggtcagttcaaacaggagctcttctagattccctagctggacatgaa
ggtccagtttcttgtctttcttttggacaggagggtgaagctgctacaacattggcaagt
gcttcttgggataaaacgattagggtttggaatatatttggaagatcccaacaagtcgag
ccgtttgaagtatactcagaagtactagccatcgacatgagacctgacgggaaagaagtt
gctgtgtctactttgaacgggcagattttgttctggaacgtggaaagcgggaaccaaacg
aacttcatcgatgccaaacgagacattcaagttggtagatacagtgacgatagatttgaa
gccaaaaatagtaagagaggtaagtgtttcagtacaatcagttatagttttgacggattg
tctttgattgctgcaggtgataataatagtatctgtctatacgacgtcaaaaatagtgta
ttgctgaggaaattcactgtctcgttgaatatgaatttggaaggtactttgaaaaagctc
aactctaagaatctaattgaaggcgggccaatagacttgcttgacagggatggtgaaaac
tctgactatgaggatcgagttgacctgaagctaccaggatcacatcgtggagacccctca
gtgcgtaatatcaaagctgctgtgagggtaacaagtattgcattttcacctggtgccagt
tcatttgcagctgcctctacggaaggattattaatatattcagtggatgacagtgtcaac
tttgatcctttcgatttggatatagatatcaccccagccagctgtctagaaatgttagag
gaaaaggaatttttgatcgctgtggtgatgagtttccgtctgaacgaacgttacttaatt
catcgcatatacgaatccattccattgaatgagattgatctgatcgttgcagacttacct
aaagtctatgtggagaggttcctacgctttattggtgaactatctcttgaatcgcagcat
attgaattcaacctaatttggatcaagagtattttggcggctcatggcaaatatattagt
gctcataagtttgagtttagtgttgctacaagaatgatccaaagattccttgccagaata
gccaaggatgtcgtaaagacgtccgttaggaacggatatcttgcagagtttttgttggat
acccgaactcaacaggacagcatccgaattgaggaggagaaactcacattgtag
DBGET
integrated database retrieval system
