Komagataella phaffii: PAS_chr2-1_0302
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Entry
PAS_chr2-1_0302 CDS
T01092
Name
(RefSeq) Putative catalytic subunit of a class II histone deacetylase complex
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ppa
Komagataella phaffii
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ppa01009
]
PAS_chr2-1_0302
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr2-1_0302
04131 Membrane trafficking [BR:
ppa04131
]
PAS_chr2-1_0302
03036 Chromosome and associated proteins [BR:
ppa03036
]
PAS_chr2-1_0302
Enzymes [BR:
ppa01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
PAS_chr2-1_0302
Protein phosphatases and associated proteins [BR:
ppa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
PAS_chr2-1_0302
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
PAS_chr2-1_0302
Membrane trafficking [BR:
ppa04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
PAS_chr2-1_0302
Chromosome and associated proteins [BR:
ppa03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
PAS_chr2-1_0302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Arb2-like
Motif
Other DBs
NCBI-GeneID:
8198849
NCBI-ProteinID:
XP_002491196
UniProt:
C4R092
LinkDB
All DBs
Position
2:complement(561226..563451)
Genome browser
AA seq
741 aa
AA seq
DB search
MEILKEEATESNGKRKLEEESDALQLSKQEGEGHLSGLPPSGKWDDNQIVNGSVIVPVVE
PKLRYITLKTGLCYDVRMRYHAKIFTSYFEYIDPHPEDPRRIYRIYKILAENGLITDPTL
SGIDQIGDYMLKIPVREATAEEILLVHSEEHLKFIESTSSMSRERLLEETEKGDSVYFNH
DSLLSAKLSCGGAIEACKAVVEGRVKNALAVVRPPGHHAEPDSPGGFCLFSNVAVAAKNI
LRNYPESVRKIVVLDWDVHHGNGTQKAFWEDPRVLYISLHRYEQGKYYPGTKAGGADQCG
ENEGLGKNINIPWPVGGMNDADYLYAFRKVVMPVCREYAPDLLIISSGFDAAEGDIIGGC
HISPAGYSQMTHMLKSLARGNVCVVLEGGYNLDSIANSALSVTKVLLGESPEEPKVTVPS
AHAIEVIDDVIKIQSQYWKTLQPAYTGICFTNPSIMGNYSLLVNPATEKKVLSDLAVNPR
LCDAVRNSQAQYLSSKFGFINLPVVSGKGLTSPSLDNQVLSTKDIFQANTIIIVIHDPSD
VWARQDPRSGLLDLSGSMIVDTSSKFVEWAVNLKYGVIDINVPLTLTGKDDETYNNVTAS
QELLLYIWDNYIQYFPVTKIALVGFGDAYNGVIHLCGHREVRSIVKASINFLDRTPLRAI
VSSIDESVTDWFYKNSLVFTSTRHPCWGEQGTSEMKRPRKKYGRVLKADIDGLPNIVDER
FEETTDFILDSIEEYEDESSN
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggaaattttaaaagaagaagcgacggaaagcaacggtaaaagaaagctcgaggaggaa
agtgatgccttgcaattgtccaaacaagaaggtgagggccatctttccggattacctccc
tcaggtaaatgggacgataaccaaatcgttaacgggtcggtaattgtccccgtggtagaa
cctaaacttagatatattacgctcaagactggtttatgttatgatgtgcgcatgaggtat
catgccaaaattttcacgtcctactttgagtacatcgatccacaccctgaagaccctaga
aggatatatcgtatttataagatactagcagaaaatgggcttatcacagatccaacgctg
tctggaatagatcaaatcggtgactatatgctcaaaatccctgttagagaagccacggcg
gaggaaattctattggtacattcagaagagcatttgaaatttatagagagtacttcaagc
atgtccagagagaggcttctagaggaaacggaaaaaggggattcggtgtacttcaaccat
gattctttgctaagtgctaagttatcttgtgggggagccattgaagcgtgtaaggcagtc
gtcgaaggaagggttaagaatgccctcgctgtggtcaggcctccagggcatcatgcagag
ccagactccccaggaggattctgccttttttccaatgtcgccgtagctgccaaaaacatt
ctcaggaactaccctgaatcggtcagaaaaatagtagttctcgattgggatgttcatcat
ggaaacggtacccaaaaggctttttgggaagaccccagagttctatatatctctctgcat
cgttacgagcagggcaaatactaccctgggacaaaagctggaggagctgatcaatgtgga
gaaaatgaaggtttagggaaaaacatcaacatcccttggcctgttggaggtatgaacgac
gctgattacctctatgcctttagaaaagttgtcatgcctgtttgcagggaatacgcaccc
gacttgctaatcatttcctctgggtttgacgctgctgaaggagatatcattgggggatgt
catatatcgcccgctggttacagtcaaatgacccacatgctaaagtcccttgcacgggga
aacgtgtgtgttgttctagaaggtggatataacctggattcgatagcaaactctgcatta
agtgttaccaaagtgctcttgggtgaatcacctgaagaacccaaagtcacagtaccaagt
gctcatgctattgaagtcatagatgatgtcatcaaaattcaatctcagtattggaaaact
ctccaacccgcatacacaggaatatgttttacaaacccttcaattatgggtaattactct
ttactagtaaatccagccactgaaaagaaagttctcagcgatctcgcagttaatccaaga
ctatgcgatgctgttagaaattcccaagctcagtatttgtcgtccaagtttggtttcatt
aatctgccagttgtttcaggcaaaggattgacttctccatctctggataaccaggttctg
tcaacaaaggacatcttccaagccaataccataataatagtaatacacgatccatccgat
gtatgggccagacaagacccgaggtctggactgctggatctctccgggtctatgatagtc
gacacctcttctaaattcgttgaatgggctgtgaacttgaaatatggagttatagatata
aatgttccattgacattgacaggcaaggatgatgaaacatacaacaacgttacagcttct
caggagctactcctttatatttgggacaattacattcagtactttccagttacaaaaatt
gcacttgttggattcggtgatgcttacaatggagtcatacacctttgtggtcatcgagaa
gtccgcagcatagtgaaagcttctatcaacttcctggatagaactccgttacgtgctatt
gtttccagcatagatgaatctgtcactgactggttttataaaaactcactagttttcact
agtactaggcatccttgttggggagaacagggaaccagtgaaatgaagagacctcgtaaa
aagtatggtagagtgctgaaggctgacatagatggactgccaaatattgttgatgaaaga
tttgaggaaactaccgactttattttagactccatcgaagaatacgaagatgagagttct
aactaa
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