KEGG   Komagataella phaffii: PAS_chr2-1_0418
Entry
PAS_chr2-1_0418   CDS       T01092                                 
Name
(RefSeq) U2-snRNP associated splicing factor
  KO
K12828  splicing factor 3B subunit 1
Organism
ppa  Komagataella phaffii
Pathway
ppa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PAS_chr2-1_0418
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ppa03041]
    PAS_chr2-1_0418
   03036 Chromosome and associated proteins [BR:ppa03036]
    PAS_chr2-1_0418
Spliceosome [BR:ppa03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    PAS_chr2-1_0418
 Complex B
    PAS_chr2-1_0418
 Complex C
   U2 SnRNP specific factors
    PAS_chr2-1_0418
Chromosome and associated proteins [BR:ppa03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    PAS_chr2-1_0418
SSDB
Motif
Pfam: PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ Htt_N-HEAT_1 HEAT_EF3_N HEAT HEAT_ECM29 UTP20 SF3b1 Adaptin_N DUF5742
Other DBs
NCBI-GeneID: 8198886
NCBI-ProteinID: XP_002491320
UniProt: C4R0L6
LinkDB
Position
2:768523..771636
AA seq 1037 aa
MSHHNDSGLIPFDPKGSNGVQAAPQYTIPKEYEEEMIDNAEDIDPLEGSIVSSKPKESDY
HKRKYDNLMNINLTQQERTYKDRMKERQLDRQEEDIQKLLKQKQEQADQKFNDAKPENQP
TRKRKKRWDVKSSEGDSVTVNILPVINGIELNNSILDKILPNGYTIVEPPLSYKPLNDLP
PDYKQEDQGYLLPEESTLALENKAVETAQELAIENLGEKEKKVHTLISNIIEGASNMRKP
ALRQLTENARTFGAQAIFDQLLPLFMKRNLDEHQRHLLVKIVGRVLYQLDDLIRPYTYKI
LVVIMPLLIDEDYYTRIEGREIVANLSKAAGLAHMISTLRPDIDHSDEYVRNTVSRTFAV
MSCALGIPVVLPFLKAVCNSKKSWQARHTGMKIVQQIAILAGSGVLPHLNGLVAAISKGL
SDEHVHVRTIAAQAASALAESSAPYGAESFQQILDELYKGIRRHRGKGLAAFLKAIGYII
PLLDPDYADYYAKMVFKVLIREFESPDEEMKRTCLKVLQQCCDTEGIEKQYLIIEVIGSF
FKSFWNRRTALDRRTAKLCCETTFHLSKRVGAGLVLDNILVHLKDESEPFRRMTAETCYK
VVQSYGTAELSDKSVDQLLDGILIAFQEQVIQDNVILKSFSVIISSLGLRIGVHLPSIVS
IILYRLKNREPEPRRQAASLITVVAPVIKKCGNEDMLLKLGSVIYESLGEVYPDVLASIL
EAMKAVIAVVGVESMNPPMSQILPTLSPILRNRNEMVQETAIGLIGMIAQRAPEYVNARE
WMRICFSLVEMVKSQRKSIRKAANRTVGYIAVAIGPQDVLVTLLNNLRVQDRQLRVCTAV
AIGIVAESCAPFTVLPALMNEYQTVENNVQNGVLKALAFMFESIGSMGKDYIYATLPLIE
DALTDRDLVHRQTAANVVKHMALNNVGFGLEDAFIHFLNLLWPNIFETSPHVIARILEGI
EGCRNVIGCGIVMNYTLTGLFHPARKVRDSYWKVYNPMYVQSCDSMVPYYPDFKDQILTK
DTEQVTPTVIEELDIWV
NT seq 3114 nt   +upstreamnt  +downstreamnt
atgtctcaccataatgactctggattgataccctttgatccaaaaggttctaatggggtt
caggctgctcctcagtataccattcctaaagaatatgaagaagaaatgatagataacgct
gaggatattgacccgctcgagggaagtattgtgagttccaaacccaaggaatcagactat
cataaaaggaagtacgataatctgatgaatattaatcttacacaacaagaaagaacttac
aaggatcgtatgaaagaaagacaacttgatcgacaggaggaagatattcaaaagctatta
aaacaaaaacaggaacaggcagatcaaaagttcaacgatgcaaagccagaaaatcaacca
accagaaaaaggaaaaagagatgggatgtaaagtcttccgaaggagactctgttacggtc
aacatattgccggttataaatggcatcgagttgaacaattctattcttgataaaatttta
ccaaatggatatacgatagtggaaccgcctcttagttacaagcctctgaatgacctgcca
ccagattataaacaagaagatcaaggatatttactacctgaggaaagcacattagcattg
gagaataaggcggtagaaactgctcaagagttggctatcgagaacttaggagagaaggag
aagaaggttcacactctcatctcaaatataatagaaggggctagcaacatgagaaaacca
gctttaaggcaactgacagaaaatgcccgtacttttggtgcccaggctatttttgatcaa
ctacttcctctattcatgaaacgaaatttggatgaacatcaaagacatttacttgtaaag
attgtaggtagagttctttaccaattggatgacttgataaggccttatacttataaaata
ttggttgtgataatgccattgttgattgatgaggattactatacgagaattgaaggaaga
gagattgttgcgaatctcagtaaagcagctggactggctcatatgatttcaaccttacga
ccagatatagatcactctgatgagtacgttagaaatactgtatctagaacgtttgcggtg
atgtcgtgtgctttgggaataccggtagttctaccctttctaaaagctgtgtgtaactcg
aaaaagtcctggcaggcaagacacacaggaatgaaaattgtacagcaaatagcaatcctt
gcaggatcaggagtattacctcatttgaatggtttggtagcggctattagcaaaggtctt
tcagatgaacatgttcatgtgagaacgattgcagcacaggcagcttcagccttggctgaa
tcatcagctccttatggagcagaaagctttcaacagattctagatgagctttataaagga
atcagaagacatagggggaaaggactggctgcctttttaaaggcaatagggtatatcata
ccgctattggaccctgattatgccgattactatgccaaaatggttttcaaggttctaatc
agagaatttgaatcaccagacgaagaaatgaaaagaacgtgtctcaaagtgcttcagcag
tgttgtgacactgaaggtattgagaaacagtacttaattattgaagttataggcagtttc
ttcaaaagcttttggaacagaagaactgctttggatcgacgaactgcaaagctgtgttgt
gagacaacattccatctctccaagagagtcggtgcaggattggttctggataatattctg
gtgcacttaaaggatgaatcagagccatttcgtagaatgactgcagaaacctgctacaag
gttgttcagtcatacggaactgcggaattatctgacaaatcagtcgatcagttgttagat
ggtattttaattgctttccaggagcaagttattcaagacaatgttattctgaaaagtttt
tcagtcatcataagttcgttgggactgagaataggtgtccatttaccctcaatagtgagt
atcatcttgtatcgactgaaaaatagagaaccggaacctcgaaggcaagcagcttcgttg
atcacggttgtggcgccagtaataaagaaatgtgggaatgaggatatgctgctcaagctt
ggctctgttatctatgagtctttgggtgaggtgtacccagatgttctcgcatccattttg
gaagcgatgaaagcggtgattgcagtagttggggttgaaagcatgaatccacctatgagc
caaattttgccaaccttgtctccaattttgagaaatagaaatgaaatggttcaagagaca
gcaattggcctcataggaatgatagctcaaagagcaccagagtatgttaacgccagagag
tggatgagaatttgtttttctctcgtcgaaatggtcaaatctcaaaggaaaagtataaga
aaggctgccaataggaccgtgggatacatagccgtggccattggccctcaagatgtcctt
gtcactttgctgaataatctgagagttcaagatcgacaattaagggtgtgcacggctgtt
gctattggtattgtggcagaaagttgcgcaccatttacagtgttgccagccttaatgaat
gaatatcaaaccgttgaaaacaatgttcaaaatggtgttttgaaggctttggcattcatg
ttcgaatcgattgggtccatgggaaaggattatatatatgctacgcttccattaattgaa
gacgcattgacggacagagatttggtgcatcgtcagactgcagcgaacgtagtcaagcat
atggcattgaataacgttggatttgggctggaggatgctttcatacattttcttaatttg
ctgtggcccaatattttcgaaacttccccacacgttattgctagaatactagagggtatt
gaaggttgtcgaaacgtaattgggtgcggaatagtgatgaattacacgttaactggactt
ttccaccctgcacgtaaagttagagactcctattggaaagtttacaacccaatgtacgtg
caaagttgtgacagcatggttccatactatcctgatttcaaagatcaaattcttactaaa
gacactgagcaagttacaccgactgtaattgaagagctcgatatatgggtatag

DBGET integrated database retrieval system