Komagataella phaffii: PAS_chr2-1_0450
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Entry
PAS_chr2-1_0450 CDS
T01092
Name
(RefSeq) Component of the U1 snRNP complex required for pre-mRNA splicing
KO
K11095
U1 small nuclear ribonucleoprotein C
Organism
ppa
Komagataella phaffii
Pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr2-1_0450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppa03041
]
PAS_chr2-1_0450
Spliceosome [BR:
ppa03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
PAS_chr2-1_0450
Complex B
PAS_chr2-1_0450
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-U1
Motif
Other DBs
NCBI-GeneID:
8198917
NCBI-ProteinID:
XP_002491357
UniProt:
C4R0Q3
LinkDB
All DBs
Position
2:complement(join(828847..829097,829163..829249,829304..829334))
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AA seq
122 aa
AA seq
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MAKYYCEYCNSYLTHDSLSVRKSHLIGRNHLRKYCDYYEEKAKELGIWDSNDLPYEITES
DLYANIPGRPLSLETPLETFPPPPSLPNLPNPPPAIYHYNTTEEKELISSVMREYQHRNT
VK
NT seq
369 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagtattattgtgaatattgcaattcctacttgacccatgactctttgagtgtc
agaaaatctcatttgattggccgaaaccatctcagaaagtattgcgattactacgaagaa
aaggctaaagagcttgggatttgggactccaacgatttaccatatgaaataactgaatcc
gatctctatgcgaatattccaggtagaccactgtcattagaaactcctttggaaacattt
ccgccgccgccaagtctgccaaacctaccaaaccctccaccagccatataccactacaac
accacagaagagaaagagctcatatcatccgtcatgagagagtaccagcacagaaataca
gtcaagtaa
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