Komagataella phaffii: PAS_chr2-1_0541
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Entry
PAS_chr2-1_0541 CDS
T01092
Name
(RefSeq) Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
ppa
Komagataella phaffii
Pathway
ppa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAS_chr2-1_0541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr2-1_0541
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PAS_chr2-1_0541
mRNA degradation factors
3'-5' decay
Pan complex
PAS_chr2-1_0541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
PK_Tyr_Ser-Thr
Motif
Other DBs
NCBI-GeneID:
8197980
NCBI-ProteinID:
XP_002491454
UniProt:
C4R100
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Position
2:complement(join(1005828..1007641,1007693..1007723))
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AA seq
614 aa
AA seq
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MSANSNSTNTENHDWAKDIDCKNVFIHGYCKFENKGCYFKHPSDDSIEKNKETKETKSSA
PLSSGTEEGSSIRKKFSFEAPSFTPSGSVASLTNKFSTMSPKLDEIPTFVPTSQQTPKKP
QQVSAESNDYFAPPNSMFTPSVPSDNSQPGLPLSAQFPQHGTTAPHNVVPEMFYAQATQY
PLNYNLYAPPPPPHFNLHLNPNERTVSSFFIDDNLRESLQKRNEACLQTFSNPSIPDIVG
VYHSLVPLNNNFDNNSARYGAVSHMYKATSNKDARLYALRRIENVNITDKQAFKTIKAWS
SIENSNIVKVHEAFTTTVFGGNSLVVAYDFYGNAKTLIEIHFQNQPELITEQHLWSYLIQ
LVNALNEVHDKGLAVRSIDLSKVIVTNKNRIKLSGCGIVDILQHENTEDIAQLQKKDLEL
LAKLLYDLSITSIYGSVSFDDKTQDQIIDHLKFSDDYKATLKYLISADFNLKEIQTRIAP
RLLDVIDGLQNSNDFIESQLSTELENARLVRLMSKLSFLHGRPEHEGDPNWSESSANYPL
TLFVDYVYHQVDERGYPVVDLAHVITCLNKLDAGIEERILLVSKDEKNCIIISYKELKTL
IEEGFNELRMRKDI
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctaatagtaatagtaccaatacagaaaaccatgattgggcgaaggatatcgac
tgcaagaacgttttcattcacgggtattgcaaatttgagaataagggctgttacttcaag
catccctcagacgattccattgagaagaataaagaaacgaaagaaaccaaatcatcagct
cctttaagctctgggaccgaagagggcagctcaatccgcaagaaatttagttttgaagcc
ccttcgttcactccatctggatctgttgccagtttgacgaacaaattctctacaatgtca
cccaagttagacgaaattccaacatttgtgccaacgagccagcagacacccaaaaagcca
cagcaggtaagcgctgaaagcaatgattattttgcaccaccaaattcaatgtttactcct
tcagttccatcagataatagtcaaccagggttgccactgtcagcccaattccctcaacac
ggaacaacagcccctcataacgttgtgcctgagatgttttatgctcaggctactcagtat
cctctgaactacaatttgtatgctcctcctcccccacctcatttcaatctccatttgaac
cccaacgaaagaacagtgagttcgttcttcatagatgataaccttagagaatccttacag
aagcgcaatgaagcatgccttcaaactttcagcaatccatcgataccagatattgttggt
gtttatcattctctggtgcctctcaacaataactttgataataactctgcaagatatgga
gctgtcagccatatgtacaaggcgacttccaataaggatgccagattatacgctttgaga
cgcattgagaatgttaacattaccgataagcaagctttcaagactatcaaggcttggagt
tctattgaaaattcaaacatagttaaggtacatgaggccttcaccacaaccgtctttggg
gggaattctctggtggtggcttatgatttctatggtaatgccaaaaccttgattgaaata
cacttccaaaatcagccggagttgataactgaacaacacttgtggtcctatctaatccag
ctggtcaatgctctcaacgaagtacatgacaaaggccttgcagttagatctatcgatcta
agcaaagtcatcgtgacgaacaagaacagaataaagctgtccggatgtggcattgttgat
attttacaacatgaaaatacagaagatattgcccaactgcaaaagaaagatctagaattg
ctggccaaattgttgtatgatctttctattacatctatatatggatcagtttcgtttgac
gataagacacaggatcagattatcgatcaccttaaattttccgacgattacaaagccacc
ttgaagtatctgatctccgccgatttcaacctaaaggaaattcaaacacgcattgcccca
agattattggatgtcattgatggcctacaaaattctaatgattttattgaatctcaattg
tcgactgaattggaaaacgcccgtttggtaagattgatgtccaagcttagttttttgcac
ggtaggcctgagcatgaaggtgaccctaactggtcagagtcaagtgctaactatcctctt
actctttttgttgactatgtttaccatcaagtggatgagaggggttatccagttgtcgac
cttgctcatgttataacatgtctcaacaaattggacgcaggaatagaagagaggatttta
ctagtgtccaaggacgaaaagaactgtatcatcatttcttataaagaattgaagacctta
atagaggaagggttcaatgagttgaggatgagaaaagacatttag
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