Komagataella phaffii: PAS_chr2-1_0592
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Entry
PAS_chr2-1_0592 CDS
T01092
Name
(RefSeq) Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
ppa
Komagataella phaffii
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr2-1_0592
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PAS_chr2-1_0592
5.6.2.5 RNA 5'-3' helicase
PAS_chr2-1_0592
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PAS_chr2-1_0592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SEN1_N
AAA_11
AAA_12
SEN1_barrel
AAA_30
UvrD-helicase
Viral_helicase1
AAA_19
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
8198029
NCBI-ProteinID:
XP_002491509
UniProt:
C4R155
LinkDB
All DBs
Position
2:1098167..1104607
Genome browser
AA seq
2146 aa
AA seq
DB search
MDEDSWSELVRSIDLSHKEVSNDQLQEKVLASTFQYLTAQSPERIKHLFCDEKNYPIAIH
SLILFSFDTTPVLEWYTPKIDYCLNTCQRCISMFHKGRAKLRQDFIVTRGLDPQSVSRFM
DIILNWELNRILIKFRNAITSSNGGRVQVTTELSLSVVECLYGCAMLRLSPELRTLFSTI
FSDLVETQESIVPSNSPAFPGVIFFLFEGTDFERNWALSVLKSFDSRKLFIEWDLLQLEE
YEVHFYRIQDPSFYNSLNCANFWCNILPLIEYTTVDNLELKLLLPASYKPMLKEVRFQIV
SLDKVLINHVMSYLDYPLPFVLRALNIFLQKFSFKFWSVVAPHTFFNFMDAILGSPHFLK
LLKELETKNCFLSIDKLSSKTPSFNDLIEWIPAMFKSLQGPSQQQMIIKASVFIWGQRDI
NISYVIELTLPLVLDCLLIQTPIYDSTFNIDVLTQSETRVFLDNNFHVVLDSTIATESPK
LMDMCCELVRELILFDSKQYASSSYNLNLRKPVKLVNFLPKFWSYLSIKIPPSNLQFTST
VLESLKFICGVFVVGIGKQTPPPPGKQDERDNLLSIISKHNKNTELFFTQASQLLSTLVT
FDPSVLRTALNGKQASIGYWSCILSSNQELYQSAANVLYEAFDVEGRLEGTRALLELNLQ
ICLQSVVENLNTLLLLKVYELCPRTLRVLMDLLHSLCDPVTGVFIENNSYDSKTRESILS
FWNVSWDFLCLIYDRTTYWASIYSVSVLIDFARDTLDTSHLLLDGFRSFMNVVSDKPEIK
NFLFDKIMLTFHKVLTWLRLGDESLLTSCLSLVMKTLNLATELELPFDNDIIELLAKYGA
RAKKFNNKLSETQQFEILERARDFNSDLVNSIVAEAEEYRNSKFNLGSVESPISIPDEKP
VKKLQSDLSKYIKYVKEQDVPAIMPGSRIKEIARLSAKEKAERDIRIKRMGKPEKAPAAP
RPPGFNSSKKKRAEDSSDDEDEEDQNDNALDTLFHPNVEELKSKTARNLREKGKMKAQLL
SMDRPKVNAAEMERKKAEYRMRMRLNVDMNPLYAKVLQWSFKRDSRTPDNADLTTYKAIS
DSYDSVEQYQNTFEPLLLLECWQGIQQAKETGQDQPFNLVVGSKTTTGNFFDVYASVKKS
VLQDRKIGDNDLVVLAYVPDGLKNMQGLDESVPRTVVKTSEHSCLGKVREIKYSNSEFCD
VTIRVHNRNNISPFLTSRSELTGLKILQMVTIEREYSSLKGLPFYDLSDKIVKAKSAEPF
NIDDTTLQETMVKFRVNKSQAQAIAGASTSSGFSLIQGPPGTGKTKTILGIVGKVLTTRN
NLHSTPISIPGAVTSGPRKPETGVRKVLVCAPSNAAVDELVIRLREGVPGISGQMFKPKV
VRLGRSDAINSAVKDLTLEELVDAELNETARAPKADQSIREKHNKVLAERNSIREALKEV
SNLKPEEVKDLQKRYSEITKAKNELGKKLDEQREEVSVSYRNREIQRRAVQFRILSQAQI
ICSTLSGSAHDFLATMDTSFDTVVIDEACQCIELSAIIPLRYGCKRCIMVGDPNQLPPTV
LSQAAAEYKYEQSLFVRMMNVHPKSVYLLNVQYRMHPQISVFPSKEFYNGKLIDGEGTET
KNTRSWHKKIPPYCFIDVTGKESTNTSNKSLFNRAEAQAVVSLIDALLGLDRDFNFASKI
GVISPYKQQVVLLRDMILRKFGRNIGIDVNTVDGFQGQEKDVILFSCVRADETKGVGFLA
DVRRLNVALTRAKSTLLIVGHASNLSGHSLWRHLVQDSKDRNVFFTQRSLLDGGKGDVTV
GVLPSGKGKRKIEGILPPEKRKNTTANRNTDFKGQLNNEQRSKFKGQKNGKKSSKDFSNV
TPSNTGYVAPPTKGSLSMDSSAPQVKSGTLPSKPTSSSQRGQKVTSDSRLNRVDSKVLPS
NDFETPGFITGVLPSSRGSSRDKTLPPTASPLSTPSPTSLIPRPGVLPPKPPISKLPSNP
QTSATSLGPSMTSFSRPSMIQSPVVYNHPTMSQPNLAYNSHVPVNSGVYPGSSSVNLPIM
NPTLPAALPLQSVSPVSESSNDPHSVSSKSNQGYLPPQSQPSALQNRKSDRQPSSYGLNS
NIDPRSGPKLAEPTDHFVHAGEKEKKKKKKKKKDKSSDKEKYKEKA
NT seq
6441 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagacagctggagtgaactggtcaggtcgatagacttgtcacataaggaagtt
tctaacgatcaactccaagagaaggtcctagcctcaactttccagtatctgaccgctcaa
agccctgagcggatcaagcatttattctgtgatgaaaaaaactatcctatagctatacat
tcactgatactgttttcatttgatacaactcctgttctagaatggtatactcctaaaatt
gactactgcctcaatacttgccagcgatgcatctccatgttccataagggacgcgcaaag
ttaagacaggatttcattgtcaccagaggtttagaccctcaaagtgtctctagatttatg
gacattatattaaactgggaattaaacagaatattaattaagttcaggaatgcaatcact
tcaagcaatggaggaagagttcaggttactacagagctttctttatcagtagttgaatgc
ctgtacggttgtgcaatgttaaggttgagcccagaactgcgaacgctattttccaccata
ttttcagacctcgttgagacacaagaatctattgtaccttcaaactctccagcatttcca
ggtgtaatattctttctgtttgaaggcacggacttcgaaagaaactgggccttatctgtg
ttaaaatcattcgactccagaaagctttttattgaatgggatttactgcaactggaggaa
tatgaggttcatttttacagaattcaagacccaagtttctataatagcttaaattgtgca
aatttttggtgcaatatccttccattgatagaatacacaactgttgacaatttagaactc
aaattgttacttcctgcatcttacaagcccatgttgaaagaagttcgttttcaaatcgtt
tcacttgataaagtcctcatcaaccacgtcatgtcgtatttagactatcctttaccattt
gtgctcagagcgttgaatatttttcttcagaagttttctttcaaattttggagtgttgta
gctcctcatacatttttcaacttcatggatgccattttggggagtcctcattttctaaaa
ctcctgaaagaattggagaccaagaattgcttcttatccatcgataaattgtcaagcaaa
acaccctctttcaatgatttaattgaatggattcctgcaatgtttaaatcccttcaaggc
ccttcgcaacagcaaatgattattaaagcttctgtttttatatggggacaaagagacatc
aatatttcttacgttattgagctgacactccccctcgtattggattgtctgctgattcaa
acacccatatatgactctacgttcaacattgatgttttaacacaatcagagactagagta
tttctagataataatttccatgttgttctggactcaacaattgccaccgaatctcctaag
cttatggacatgtgctgtgaattagtaagggagcttattttatttgactctaagcaatat
gcgagcagcagttataacctgaaccttcgaaagcctgtgaaattggtgaattttttgcca
aaattttggtcctacttatcaatcaagatacccccaagtaatttacagtttacatctaca
gttttggaatctctcaagtttatatgtggtgtttttgttgtaggcatagggaaacaaaca
cctccgcctccaggaaaacaggatgaaagagataacctcttgtccataatctccaagcat
aataagaacacagagttattttttacccaagcttctcaactgttgtcaacgcttgtaact
tttgatccgtcggtgctgagaactgctttgaatggtaaacaagcatccattggttattgg
tcatgcatcctctcaagtaaccaagaactatatcagagtgcagcaaatgttctttatgaa
gcgttcgatgtggaaggtagacttgaaggtactagagccttgctggaattaaatcttcaa
atttgtttgcagtcggtcgtcgagaaccttaatacactgttgcttttaaaagtatatgaa
ctttgtccaagaacactccgagtgctcatggatttgcttcattcattatgcgatccagtt
actggagtttttattgaaaacaactcctatgattccaaaacaagggagagtattttaagc
ttttggaatgtttcttgggatttcctttgtttgatctacgatagaactacttactgggcc
tccatttactccgtttctgttcttatcgactttgccagagatacattggacacatcccat
ttgttacttgacgggtttaggagtttcatgaacgtagtttcagacaaacctgaaatcaag
aactttttgttcgataagattatgttgactttccataaagttctcacatggttaagactt
ggtgacgaatcacttttgaccagctgtctgtctttggtgatgaaaacgttgaatttagct
actgaacttgaattgccgtttgataacgatatcattgagcttcttgccaaatatggagca
agggctaaaaagttcaacaataaattgagtgaaacacagcaatttgaaattctagaaaga
gccagagacttcaacagtgaccttgtgaattccattgtggcagaggcagaggaatataga
aattccaaattcaacttaggttcggtagagtcaccaatttccattccagatgaaaagcca
gtcaagaagcttcaaagtgatctctccaaatatattaagtatgtaaaagagcaggatgtt
cccgctatcatgcctggatctagaattaaagagattgctagattgtctgctaaggaaaag
gctgaaagagatatacgaatcaaaaggatgggtaaaccagaaaaagctcctgctgcaccc
agacctcctggttttaactcgtcaaaaaagaagagggccgaagattctagtgacgatgaa
gatgaagaggatcaaaatgacaacgcactggatactctttttcatccaaatgtcgaagaa
ttgaagagcaagacagccagaaatttacgtgaaaaaggcaagatgaaagctcaattgctt
tccatggatagaccaaaggtgaatgcagctgaaatggaaaggaagaaggcagaatataga
atgagaatgcggttgaacgttgacatgaacccattgtatgctaaagttttgcaatggtct
ttcaaacgagactccagaactccggataatgccgatcttacaacgtacaaagcaatttct
gactcatacgactcagttgaacagtatcagaacacatttgagcctttgcttttacttgaa
tgttggcagggtattcagcaagccaaggaaacgggacaggatcaaccatttaatctagta
gtgggcagtaaaactactactggaaactttttcgacgtatatgcttcagttaagaagagc
gttttgcaagacaggaagatcggtgataacgatttggttgtgcttgcttatgttcctgac
gggttgaaaaatatgcagggacttgatgaatctgtacctcggactgttgtaaaaacttca
gagcactcctgccttgggaaggtacgagaaatcaagtactctaattcagagttttgtgat
gttacaatcagagtgcataataggaacaatattagtcctttcttaacttcgagatcagaa
ttgactggcctcaaaattttgcaaatggtaacaattgaaagagaatactcctcgttgaaa
ggattgccattctacgatctctctgacaagattgttaaagccaaatctgctgagccattt
aatattgatgacacaacgttgcaagaaacgatggttaagtttagggtcaataaatctcaa
gcccaagccattgctggtgcctcaacatcgtcaggcttctcgctcattcagggtcctccg
ggtacgggtaagactaagaccatccttgggatagtaggcaaagttttaaccactcgcaac
aaccttcatagtaccccaatttcaattccaggagcggtgacttctggacctagaaagcct
gaaaccggagtaaggaaggtcttggtatgtgccccttcgaatgccgcagttgatgaactg
gtcattagattgcgggagggtgttccgggaatttcaggacaaatgttcaaacctaaggtg
gttagattaggtaggtctgatgctataaactcggcggtcaaagatttaactctggaagag
cttgtagacgctgagctcaatgaaacggctcgtgctccaaaggctgatcaatccattaga
gagaaacacaacaaagttctagcggagagaaattccattcgagaggctctaaaagaggtt
tctaatttgaaaccagaggaagtcaaagatttacaaaaaagatacagtgaaattaccaaa
gccaagaatgaactgggaaagaaactggatgagcaaagagaggaagtttctgtgtcttat
agaaatcgggaaattcagagaagagcggttcaatttcgaattctatctcaggcacagatt
atttgttccactttatccgggtctgcgcacgattttctggcaacaatggacacttctttt
gatactgtggtcattgatgaagcatgtcagtgtattgagctttcggctattattcctctg
cgatacggctgtaaacgttgtattatggttggtgacccaaaccagttgcctcctactgtc
ttgtctcaggctgctgcggagtataagtacgagcaatcactttttgtcagaatgatgaat
gttcatccaaaatcggtttatctgctaaatgtgcagtaccgtatgcatccccaaatttct
gtttttccatcaaaagagttttacaatggaaaactcattgacggtgaaggtactgagaca
aagaataccaggagctggcacaaaaaaatacctccctattgcttcattgatgtgacaggt
aaggaaagtaccaatacgagcaataaatcgttattcaacagggctgaggcacaagctgtg
gtctctttgattgacgcgctattggggcttgatcgtgatttcaactttgcttcaaaaatt
ggagttatatcaccctataaacaacaagttgtactcctcagagatatgatacttcggaaa
tttggcagaaatataggaatagatgtcaacactgttgatggattccaaggtcaagaaaaa
gacgttattttgttttcatgtgttcgtgccgatgagactaaaggagttgggttcttggca
gatgtgagaagactaaacgtggcactaactcgtgccaagtctactcttttaattgtagga
catgcaagcaatttatccggccattcgttatggaggcatttagttcaagattccaaagac
cgaaatgtgttttttactcaaagatccttgctagatggaggtaaaggtgatgttacagtc
ggggtattaccatctggaaagggaaagcgaaaaatagaaggtatcctacccccagagaaa
agaaagaatactacagctaatcgtaacactgatttcaaaggtcaactcaacaatgaacaa
cgttcaaagttcaaaggtcaaaaaaatggtaaaaagtcatccaaagatttttccaatgta
acacccagtaacactggttacgttgctcctccaactaagggatccttatcgatggacagt
tctgctccccaagtcaaatcaggaacattacctagcaaaccgacgtcaagttctcaaaga
ggacagaaagtgacatctgattctagattgaatcgagtagattccaaagtgttaccaagt
aatgattttgaaactcctggtttcattactggagtcttaccaagctccagaggtagttct
agggataaaacgttgcctccaactgcaagtccgctaagcactccttctccaacttctttg
ataccaagacctggtgtgttacctccgaaaccaccgatatcgaaactgccttcaaatcca
cagacttctgcaacatcactgggaccttcaatgacctctttcagtcgtccttcgatgatt
cagtccccagttgtatacaatcatcctaccatgagtcagccaaatctggcctacaattcc
catgtgccagtcaactccggggtttacccaggttcgtccagtgtaaatcttccaatcatg
aacccaacattgccagcagctctacctctgcaatctgtatcccctgtttcagaaagctca
aatgatccacactcggtatcttcaaaaagtaatcaaggataccttcctccgcaaagtcag
ccatccgccttacaaaatcgaaaatctgatcgccagccttcatcttacggattaaacagt
aatattgatcctcgttcagggccaaagttggctgaaccaacagatcatttcgtacatgct
ggagagaaggaaaagaagaagaagaagaagaagaagaaggacaagagtagcgataaagaa
aaatacaaagaaaaagcataa
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