KEGG   Komagataella phaffii: PAS_chr2-2_0184
Entry
PAS_chr2-2_0184   CDS       T01092                                 
Name
(RefSeq) Single-stranded DNA endonuclease (with Rad10p)
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
ppa  Komagataella phaffii
Pathway
ppa03420  Nucleotide excision repair
ppa03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PAS_chr2-2_0184
   03460 Fanconi anemia pathway
    PAS_chr2-2_0184
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppa03032]
    PAS_chr2-2_0184
   03400 DNA repair and recombination proteins [BR:ppa03400]
    PAS_chr2-2_0184
DNA replication proteins [BR:ppa03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    PAS_chr2-2_0184
DNA repair and recombination proteins [BR:ppa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     PAS_chr2-2_0184
SSDB
Motif
Pfam: ERCC4
Other DBs
NCBI-GeneID: 8198275
NCBI-ProteinID: XP_002492017
UniProt: C4R2L3
LinkDB
Position
2:complement(2040811..2043693)
AA seq 960 aa
MSLFVPEDDNLEVYRPEESIDDRAPEISIPLKEAAHQEPIVSDPIDVLCSLPLKYQHLIL
ADLLRQDGLLLLGKGLGLEVIVSNLLHALSSPLRENKRGLIILLNATEFENEKIRELLVE
LSWVEKLNKGMKKSGRKFVRIDANYVVGKRSKIYASGGIISVTSRIFIVDLLSNLLNLNL
ITGIIVLHAEKVTDTSNESFIIDFYRQTNKWGFVKAISDDVEKFIHGFQPLKTKLKDLKL
SNTLIWPRFHIEVANSLKMNSKNNLVVEISVSLTKRMKTIQLAILSCIEACINELKRHNP
EMSTEYWDISNALNKEFVQVIRATLDPVWHRCSWTTKQVIHDISTLKELLGYLLNYDAIK
FYETIKTIFDVNKSTKNSSPWLMLDEAISILSLSRERVFLQTSSEPQSFLLEELPKWQQL
TEIFQDIADDRSRGNMNEGPILIMCNERSTCVQLRKYLSQNTNRATPGRKFMMMGLNHYN
QVQKALKQLKEGLKQEKVVESTDLEALTVSKTFTRNRAHATSSKRRRTRGNKAIQAVDRL
YNRDAFIEQDSDQLNISNLEEDSDPGADFEVTGSRNLILSHSIEPADQIVIEKFDARTNE
SLLDELNPSHIILYEPNLSFIRRIEVYEAIRKQRAAQTFFMYYKDSVEEETYLNSIKREK
EAFTKLIREKATLASHYSTDEDNQFRVTKSQVFNTRIAGGSAFRTPTDESSIIVDVREFR
SSLPNLCYRIGLKVVPAMLTIGDYIISPRICVERKSIPDLIGSFNSGRLYQQCEQMFRHY
QLPALLIEFQEGKSFSLEPFAELRTRPNQTSQQMTPSTVKFFQQDIQAKLITLLIAYPKL
KIFWSSSPTQSAQILISLKATEREPDLEKAIQAGVDANMMNSSGAPEFNDAAIDVLTQIP
GVTKVNYHLIITKVKNLKKFVNLSLQEMQDIIGKEAGSVAYNFVNWKFNSTSTNSNGLNV
NT seq 2883 nt   +upstreamnt  +downstreamnt
atgtctttattcgttccagaagatgacaatctagaagtttacaggccagaagaatcgatt
gatgatagagctcccgaaatatcaattcccctgaaagaagcggctcaccaggaacctatt
gtgtcagatcccatagatgttctctgttcactacctctcaagtatcaacatttgattctt
gcagatttgttgagacaagacggtcttttacttcttggaaaaggcttaggactggaggtg
attgtttctaacctcctgcatgcattatctagtcctctaagagaaaataaaagaggctta
atcatacttctgaatgctaccgagtttgaaaatgaaaaaattagagaactgttggtagaa
ttaagctgggtagagaaattgaataaaggaatgaaaaagagcggacgcaaatttgtcaga
attgatgccaactacgtagtaggaaagcggtcaaagatatatgcttctggtggtatcatc
tccgtcacatctagaatattcatagttgatttactgagcaaccttctcaatctgaattta
ataacaggaataattgttttacatgcagaaaaagttacggatacttctaatgagtctttt
ataatcgatttctacaggcaaacaaacaaatggggttttgtgaaagcaatatcagatgat
gttgaaaaattcatacatggttttcagcctttgaaaacaaagttgaaagatctaaagctt
tcaaatactttgatttggccaagattccatatcgaggtggccaactcgttgaaaatgaat
tccaagaacaacttggttgttgaaattagtgtttcacttacaaagagaatgaaaacaatc
caattagctatactttcctgcattgaagcatgtatcaatgagctcaagcgacacaaccct
gaaatgtctacagaatattgggacatttccaatgcactgaataaggagtttgtccaagtc
ataagagccacattggacccggtgtggcatcgatgttcttggacaacgaaacaagttatc
cacgatatttccactttgaaggaactgctgggttatcttttgaattatgacgctataaag
ttttatgaaacgataaaaaccatatttgatgtcaacaaatctacaaagaattcatctcca
tggttaatgttagatgaggccatttcaattctttcgttgtcaagagaacgagtctttttg
caaacctccagcgagcctcaaagcttcctattggaagaactacctaaatggcagcagcta
acggaaattttccaagatattgctgatgaccggtcacgcgggaatatgaatgaagggccc
atcctcatcatgtgtaatgaaaggtcaacatgcgttcaactcagaaagtatttatcacaa
aatacaaacagggctacacctggccgtaagtttatgatgatgggtcttaatcactacaat
caggtccagaaagccttaaaacaactgaaagaaggactcaaacaagaaaaggttgtggaa
agtactgatttagaagctcttacagtttctaagaccttcactaggaatagagcccacgca
actagttccaaaagaaggcgtacaagaggtaacaaggccattcaagccgttgatcggctc
tacaatagggatgctttcattgaacaggacagtgatcaattgaacatttcaaatttagag
gaagattcagatccaggtgcggattttgaggttaccggctcaaggaacctgattctttct
cattcaattgaaccagcagatcaaattgttattgagaaatttgacgctagaactaacgaa
tcattacttgacgagttgaacccctctcatattattctctatgagccaaatttatcgttc
atcagaagaatagaggtttatgaagctatccgtaaacagcgtgcagcacagacatttttc
atgtattacaaagactctgtcgaagaggaaacttacttgaactctatcaaaagggagaaa
gaagcgtttacgaaactcattagggaaaaggccaccttagcgtcgcattactctactgat
gaggataatcaatttagagtcacaaaaagtcaagtattcaacacccgtatagccggtgga
agtgcatttagaacaccgacagatgagtcaagtattattgttgacgttagagagtttaga
tcatctctgccaaatctctgctaccgaattgggttgaaagttgttccagcaatgctaact
ataggcgattacatcatatctccgcgtatctgcgttgaaaggaaatccattcctgattta
atcggaagtttcaactcaggacggctctatcaacagtgtgaacaaatgtttcgtcattac
cagcttccagctttattgatagagtttcaagaagggaaatctttttctttagagccgttt
gcagagttgagaactagaccaaaccaaacctctcaacaaatgacccccagcacggtaaag
ttttttcagcaggatattcaagcgaaactaatcactttgttaattgcttatccaaaatta
aagattttctggtcgtcctctccaactcaatcggcacagattttaatttccttgaaagca
actgaaagggaaccagatttggaaaaggccatacaagctggggtcgatgcaaacatgatg
aatagttctggcgccccggaattcaatgacgcagccatagatgtacttactcaaatacca
ggtgtgaccaaggtcaattatcatttgattataactaaagtgaaaaacctcaagaagttt
gtcaatctgtcgttacaggagatgcaggatataatcggaaaagaggctggatctgtagcc
tataactttgttaattggaagttcaactccacgtctacaaattcaaatggattaaatgtt
taa

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