Komagataella phaffii: PAS_chr2-2_0340
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Entry
PAS_chr2-2_0340 CDS
T01092
Name
(RefSeq) Conserved zinc-finger domain protein involved in pre-mRNA splicing
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
ppa
Komagataella phaffii
Pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr2-2_0340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppa03041
]
PAS_chr2-2_0340
Spliceosome [BR:
ppa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
PAS_chr2-2_0340
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Gene cluster
GFIT
Motif
Pfam:
zf-UBP
UCH
Lamba1_VP3
Motif
Other DBs
NCBI-GeneID:
8198240
NCBI-ProteinID:
XP_002491846
UniProt:
C4R242
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Position
2:complement(1746334..1747668)
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AA seq
444 aa
AA seq
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MFPMVTLKIGDRYLFSCLMPQSDSERPHKRAKLDQKNPIENDGENDNDIGKHANDGETNR
LSQVRNLYFNTINRHKLDFDFEKKCQVTLSKSNVYCCLVCGKYLQGRSPTSQAYLHSLDV
NHHLFISFSTLKTFALPEGFEVKDHDGSLDDIKELISPAYTKDQVASLDKQTTTARDIDG
NPYRPGFIGLNNVKGFNDYSNTVLLALGHIKAVRNYYLLNSFKDSFNQELGLFIRRMWSS
KQFRPHISPAEIMRVVTEESKNRFNLTQQKTPRDFFLFLLHLMPHRVRKSFRGAAGGSSF
LMIPLKLPRTTVFNDETPQINLQTLINQFEKDKPVKEAPRVLLLHFDRNQQDIQLDSVSG
SAINNTIINFPQDLQFNQTYKLVANIVQDVVPGSSGEDTIAYKIQLYDKGRDQWLQIHDL
KVQEIERELLFLHQSVLQVWERKI
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgttccctatggtgacattgaaaattggtgatcgatatctcttttcttgcctgatgccc
cagtcagactcagagagacctcataaaagggcaaagctagatcaaaagaacccaattgag
aacgatggggagaatgacaatgatattggcaaacatgctaacgatggcgaaaccaacagg
ttgtcgcaggttcgaaacctttacttcaatacaataaatagacataaacttgactttgat
tttgaaaaaaaatgtcaagtgaccttaagcaagtccaatgtctactgttgcttggtatgt
ggcaaatatcttcaaggtaggtcaccgactagccaggcgtaccttcattcattggacgta
aaccatcatctattcattagttttagtacgctcaaaacattcgctttgccagaaggcttc
gaagtcaaagatcacgatgggtctttggatgacatcaaagagctaataagtccagcatat
acgaaagaccaagtggcttccctcgataaacaaacaaccactgcaagagatattgatggt
aacccttatagaccaggatttattggcttgaataatgtgaagggattcaatgattacagc
aacactgtactccttgcgttgggccatataaaagctgttcgtaactactatcttttgaat
tcatttaaagattcattcaaccaggaacttggacttttcatacgtcgaatgtggagtagc
aagcaattccgcccacacatatccccagcagagataatgagagtagtcacagaagagtcg
aaaaaccgctttaacctcacacagcaaaagacaccaagagattttttcttgttcctcctt
catttgatgcctcatcgtgtgaggaaatcgtttcggggtgctgctggcggctcttcattc
ctaatgatccctttgaaactccccagaactacagttttcaatgacgagaccccacaaatt
aatctacaaacattaattaaccagtttgaaaaggataagcccgttaaagaagcacccagg
gtgctcttgttacattttgacagaaatcaacaagatatccagttagacagtgtgtctggc
agtgctatcaacaataccataattaattttcctcaagatttacaattcaatcagacatat
aaacttgttgccaatatcgtacaagatgttgtcccagggagttcaggagaagacaccata
gcatacaagattcaactttatgataaaggacgtgaccaatggttacagatccatgatcta
aaggttcaagaaatagaaagagagttgttgtttcttcatcaaagcgttcttcaggtttgg
gaaagaaaaatataa
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