Komagataella phaffii: PAS_chr2-2_0378
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Entry
PAS_chr2-2_0378 CDS
T01092
Name
(RefSeq) Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ppa
Komagataella phaffii
Pathway
ppa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAS_chr2-2_0378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr2-2_0378
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PAS_chr2-2_0378
mRNA degradation factors
5'-3' decay
Decapping complex
PAS_chr2-2_0378
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
8199089
NCBI-ProteinID:
XP_002491807
UniProt:
C4R203
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All DBs
Position
2:1680898..1683399
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AA seq
833 aa
AA seq
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MAWNSKKRKDDRYESYKDFEDEDELNDETFGSDVYVGKNFDFSGGKPKANVPSAPAQPPN
MLYAQAARTPVEDVLKPMASLWSEPSSQSKPQQQAPSQPTEKVLSLEEIEAQLLGGSVST
GPEAQQSPFYGYPPNIHPGQNQQFMQQFPNGVPLGFMVPPFNQSYYGPPDGQYQPSTVQH
QGISQMQPPPQGVSQSVQPFPVSQLSNSVPPHVMQMPQVSTEGYSNAGPEGLAQTDSHSP
TNEGQLDKERKAEPQDTLLDEEQQRPVGSTKERKTFDLSSLPALGSEEAHQRRIALQRQH
HHPTEPVENYSKYENRQNHQLRSHHRHEDRFYNLDDPNLSPKERERLARRNHKLERILRG
SGFMTPKDKDYCTQSQLSQIVTDDPYNEDFYYQVYKVLNNPNANGDTNVIAQKYLEQSGH
KLGGKDQRVDVALQRMQHQVSLAVTVVRNRNAKKAEKSKSEQHPVFGKTTSATSKKPRQQ
LDVGKSLIDRVAEGKEDDTYEEREGSAKDITIKKTLSPIELKFSKSSQTFQLYLIEKIFD
EILKLESQEREGVDITDNSLWEALNLEPMGTQQINNAEEIPSFISILYYEKGMKLFPRTF
HFLSNEHRLILVNLIFNHLQKLYVILKGSYKIYESNDYQVPSEINNSIEQFQGTVLKSLV
LFLSEAKFQDILESLIVLLNNNNLLFLCTTKVGLSIITILISRLELIKQELSQTLSGEDL
STWSSVYDNLFQSLEGRLSSIFPPKSNQQLADDSHVWQFLASLTLAGRLNHQRIIVGEVR
TQIFDVVDQVKNLRATNDPVKVEKSNILLSNLNLFLNVMGLNATENDITELKS
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcctggaattcaaagaaaagaaaggatgaccgatatgagtcctataaggattttgag
gatgaagatgagttgaatgacgagacatttggcagtgatgtttatgttggtaaaaacttt
gatttttctggcggcaaaccaaaagcaaatgtgcctagcgccccagctcaacctccgaat
atgttgtatgcccaggcagctcgaactccagtagaagatgtgttgaaaccaatggcttcg
ttgtggtcggaaccaagctctcaatccaaaccgcaacaacaagctccgtctcaacctaca
gagaaagtgttgtcattagaggaaatcgaggctcagcttttgggcgggtccgtttctaca
ggtcctgaagctcaacaatccccattttatggctatcctccgaacattcatcctgggcaa
aatcagcagttcatgcagcaattccccaatggcgttcctcttggattcatggtgcctcca
tttaatcagtcatactatggaccccctgatggccagtatcagccctctactgttcaacat
cagggcatttctcagatgcagccaccaccgcagggagtttctcaatcagttcagcccttc
ccagtttcccaactatctaactcggtacctcctcatgttatgcaaatgcctcaagtttca
accgaaggctattctaacgcaggacctgaggggctagcccagactgattctcattcgcct
acaaacgaaggccaattggataaagaacgtaaagccgagccacaggatactttgctggat
gaagaacagcaacgtcctgtcgggtctactaaagaaagaaaaacttttgacttatcgagc
ttgccggctctcggatccgaggaagctcatcagagaagaattgcccttcagaggcagcat
caccaccctaccgagcccgttgagaactactcgaaatacgaaaaccgccagaatcatcag
ttgcgttctcaccatcgccatgaagatcgattttataaccttgatgatcctaacttgtcg
cctaaggaacgagagcgtttagcaagaagaaaccataagctggagagaattctacgtggc
tccgggttcatgactcctaaggataaagactattgcactcaaagccaattgagtcagatt
gtgacagacgatccttataacgaagatttctactatcaggtttacaaagttctgaacaac
cccaatgcgaacggggacacaaatgtaattgcacaaaaatatctcgaacagagtggtcac
aaattaggtggtaaggaccaaagggttgatgttgcacttcaacggatgcagcatcaagtt
tcacttgcagttaccgttgttcggaatagaaatgctaagaaggccgaaaagagtaagagt
gagcaacatccggtgtttggtaaaacaacttctgctacatcaaagaaacctagacaacaa
ctcgatgttggcaagtctttgattgacagggtggccgaagggaaagaagatgatacttat
gaagagcgagaaggatctgccaaagacattaccatcaagaaaacattatctcctattgaa
ttgaagttctcaaaatccagtcaaacgtttcaactgtatttgattgaaaaaatatttgat
gaaattttgaaactggaatctcaggagcgtgagggtgtcgacatcactgataattcactg
tgggaagctttgaatttggagcccatgggcactcagcaaattaacaatgctgaagaaatt
ccgtcttttatttcaatcctttactacgaaaagggtatgaagttgttcccacgtacgttc
cactttttgtccaacgagcatcgtcttatccttgtcaatttgatcttcaaccacttacaa
aagctttatgttattttgaagggatcctacaagatatatgagagtaacgattatcaagtt
cctagtgagatcaacaactcaattgagcaattccagggtacagttttgaagtccttagtc
ctctttttatcagaggctaaatttcaagacattcttgaatcgcttatcgtactcttgaat
aacaacaacttattgtttctttgcactaccaaagttggactttcgattattaccattttg
atttcacgactggaattgattaaacaggaattatctcagacgttaagtggagaagatttg
tcaacatggagttcagtttatgataacttgttccaatctttggaaggacggttatcgtct
atctttcctccaaaatcgaaccaacagctagcagacgactcacacgtttggcaatttttg
gcgtctttaactctggctggccgattgaaccatcaaaggattattgtgggagaagtccga
acacaaatcttcgatgtagttgaccaagtgaagaacctaagagccaccaacgatccagtt
aaggttgagaaatcaaatattcttttgtcaaatttgaaccttttcctcaacgtaatgggt
ttgaacgcaactgagaatgacatcactgaactaaaatcttaa
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