Komagataella phaffii: PAS_chr2-2_0414
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Entry
PAS_chr2-2_0414 CDS
T01092
Name
(RefSeq) Protein with a role in maintenance of cellular integrity
KO
K18748
protein SSD1
Organism
ppa
Komagataella phaffii
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr2-2_0414
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
PAS_chr2-2_0414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
Rrp44_CSD1
OB_RNB
Rrp44_S1
TolA_bind_tri
TctC
Motif
Other DBs
NCBI-GeneID:
8199119
NCBI-ProteinID:
XP_002491774
UniProt:
C4R1X0
LinkDB
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Position
2:complement(join(1615026..1618408,1618510..1618696))
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AA seq
1189 aa
AA seq
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MSSSSNSRSNEAEMPSIITTAESNDSGVQSNKVITTTATKGNKPKILHIAHRRSPSELTS
LMVEQFNLQCQLEAVQHQQQQILQQQQQQYLSPQKPKSNSAVTHGYPPSSSSNQDYNHRR
SPSNSRTLGHSRRHSLGLDEAKKQAAIAQQQRSPSKLSISSSTATPAPAFKFPASPTLKP
QDTVERKPSHTRSKSAVPSCERSRSPQHSFQFPPRDKTNLSPPVPSFAYDSSPSHSRRHS
GSNNSSWRKHTSTSSLSSDPQAFFPGHRSKSSLNSNSISSITNFTNVNNGGNRKSLFAPY
LTQASLPDLLNEGRLVAGILRVNKKNRSDAYVSTDGLLDADIFICGSKDRNRALEGDLVA
VELLAVDEVWNAKREKEEKKRRKDRPRSRNSNNADIHNDASTNSYSSVSNETGDYQVLDN
GLQRRGSLKQRPTQKKNDDLEVEGQSLLLVEEEEINDEYKPLYAGHVVAVIDRIPGQLFS
GTLGLLRPSQASNLNKDINVKPKIVWFKPTDKKVPLIAIPTEQAPKDFVDNHDSYVEKLF
VASIKRWPITSLHPFGTLISELGNMNDDNTEVDAILRDNNFLCDEYDNPDEFISDITSTV
NLEESRKIFEDQYIIAASPTGACYDHALHVKRLEDTTIEFGIHISDISHYVKPGSNLDKK
AKKRSHSVFLPQRETHLYPKIVNDAISMKENSKNLAISVVFKINTLTFEVDDVWIGPSVV
IPKQLISYSAIDLILNDETTSANATTDYIKTFYFIAREFRRKRLHDPILENGPVLTLMDQ
LDDERVKLSLNIYDPIPAEAMINEIFHKVNSVVAHRIFSLLGEVAFLRRQPHPTLQKLET
YVKKVNNLSIKLNTTDGGTLQDSLLQIKDENTRKVAETILHKCMPRGKYFIAGKTDPENY
SHYLHNLPLYTHFTAPSRRYSDLIVHRQLKFALAKECDPNLVGSQHPFAKDLDPHYLKMN
ADYCNFKKDCAKAAQEQAIHLLLSQTIKSMSEESGQILSMGIVVQVYESAFDVFLPEFGI
EKRVHGDQLPLIKAEFDKDKRVLELYWEKGVDSATFIPEDENEPLSYRASIKNSYRSSTA
DAARNQSKKMIISSNEDSKKSSLDPHNGSFTFPVTSFSAYGTEEDSVSDSYRGNDDNPLA
PYLEACITRTEEENNIQEIRELHSVPVLLRAEIGMALPCLTVRCINPFA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgagctcctcctctaactcccgttctaacgaagccgaaatgccgtcaattataactacc
gctgagtcgaacgattctggagttcaatccaacaaggtgataaccacaactgctactaaa
ggcaacaagccgaaaatattgcacattgcgcatagacgatccccaagtgagttgacttcg
cttatggtcgaacagttcaaccttcagtgtcaattggaagctgttcaacatcaacaacaa
caaatattgcaacagcaacaacagcaatatttatcccctcaaaaacccaagagcaactct
gccgtgactcatggatatcctccttcaagtagcagcaatcaggattataaccatagaaga
agcccctccaattctagaacgcttggacactccaggagacactccttaggacttgacgag
gcgaaaaaacaagcggctattgctcaacaacagagatcaccttcaaagttgtcaatctca
tcctctacggctactcccgcaccggctttcaaattcccagcttcccccactttgaagcct
caggataccgttgagagaaaaccatctcatacgagatctaaatccgctgttccttcatgt
gaaagatctcgttctccgcaacactcttttcagttcccacctcgagataagaccaactta
agccctccagttccatcctttgcatatgattcttctccttcacacagcagacgccattct
ggaagcaacaacagctcctggcggaagcacactagtaccagctcgctttcttctgatcct
caagcattttttcccggtcaccgttctaaatcctccctcaacagtaactccatttcttca
attacgaactttactaatgttaataatggtggaaatagaaaatctttgtttgcaccctac
ttgacccaggcatctttacccgatcttttaaatgagggaaggctggttgccggaattctc
cgtgttaataagaaaaaccgatctgatgcttatgtgtctacggatggactattggacgct
gatatttttatttgtggttcaaaggatcgtaacagagcactggagggtgatttggtggct
gttgagttactcgcggttgacgaagtctggaatgcgaagcgggaaaaggaagaaaagaaa
aggagaaaggacagaccaagaagtcgcaactccaataatgctgatatccacaacgatgct
tctaccaatagttattcttcagtgtccaatgagactggtgattaccaagttttggataat
ggcttacaaagaagaggctctcttaagcaaagaccaacacaaaagaagaatgacgattta
gaagttgagggtcaatctttactacttgttgaggaagaggaaatcaatgatgaatataaa
cctctttatgctggccatgttgttgccgttattgatcgtattcccggtcagttattttcg
ggtacacttggtctcttgaggccctctcaggcttctaatcttaacaaggacattaatgtg
aagccaaagatagtttggttcaagccaacggacaagaaggttcctttaatagccatacct
acagaacaggcgccgaaggactttgttgataatcacgatagttacgttgagaagctgttt
gttgcatctatcaaaagatggcctatcacatctctgcatccctttggtacactcatatct
gagttgggtaatatgaatgatgataatacggaagttgatgctattttgcgagataataat
tttctttgtgatgaatatgacaatccggatgagtttatatcagacatcacatctaccgtt
aaccttgaggagtcaagaaagatttttgaagatcaatacataatcgctgcatctccaact
ggtgcttgttatgatcatgctttgcatgtcaagaggcttgaagatacgacaatagaattt
ggaattcatatttctgacatatcacactacgttaaacctggctccaacttggataagaaa
gctaagaagaggtctcattcagtttttttaccacaaagagaaactcacctataccctaaa
attgttaatgatgcaatttcaatgaaagaaaactcaaagaatctggctatttcggttgta
ttcaagattaatactttgacttttgaagtggatgatgtttggattggtccttcagttgtg
atacctaaacaactaatttcttactctgctatagatctgatactgaacgacgagactact
agtgcaaatgcaactactgattacatcaagactttttacttcattgctcgtgagtttaga
cggaaaagattacatgaccctattttggagaatggaccggttttgacgttaatggaccag
ctagacgacgaacgagtgaaattatcactcaatatttatgatccaattcctgcggaagct
atgatcaatgaaatctttcataaagttaattctgttgttgcgcatagaattttcagtttg
cttggagaagtggcttttttgagaaggcagccgcatcctaccctccaaaagttggaaact
tatgtcaaaaaggtcaataatctatccataaaattgaataccactgatggaggaactctt
caagattctctgctacagattaaggatgaaaacacacgtaaagtggcggaaacaattctt
cacaagtgtatgccaagaggtaagtactttattgccgggaaaactgaccctgaaaactac
tctcattatttgcataatttgcctttgtatacacattttacagcaccttccagaagatac
tcagaccttatagttcataggcaactgaaatttgctttggccaaagaatgtgatcctaat
ttagttggatcacagcatccttttgcgaaggacctagatccacattacttaaagatgaat
gctgactactgtaatttcaaaaaagactgtgcaaaagctgctcaagagcaagcaattcac
ttgttgctttcccaaacaataaaatccatgagtgaagaaagcggacagatcctgagcatg
gggatagttgtccaggtatatgagagtgctttcgatgtattcttaccagagtttggcata
gagaaacgggttcatggggaccaactacctctaataaaggcagaattcgataaggacaaa
cgtgtattggagctttactgggaaaagggcgtggattctgccacgtttatccccgaagat
gaaaatgaacccctttcttacagagcttcaattaaaaatagctaccgttcttcaactgca
gatgcggctaggaatcaatccaagaaaatgattatcagtagtaatgaagatagtaagaaa
tcttcgttggacccccacaatggatcttttacattcccagtcaccagtttttcagcttat
ggtacagaggaggattcggtttctgactcttatcgtggaaatgatgacaatcctctagcc
ccatatctcgaggcttgtatcacccgaacagaggaagaaaataatattcaggagatccga
gagcttcactctgtccctgttctattgagagctgagattggtatggcattgccttgtctg
actgttcgttgtatcaacccttttgcttag
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