Komagataella phaffii: PAS_chr2-2_0424
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Entry
PAS_chr2-2_0424 CDS
T01092
Name
(RefSeq) Splicing factor, component of the U4/U6-U5 snRNP complex
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ppa
Komagataella phaffii
Pathway
ppa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PAS_chr2-2_0424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppa03041
]
PAS_chr2-2_0424
Spliceosome [BR:
ppa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
PAS_chr2-2_0424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_SCAP
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
WD40_like
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
Beta-prop_HPS5
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
WD40_RFWD3
WD_LRWD1
Beta-prop_NOL10_N
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
8199127
NCBI-ProteinID:
XP_002491765
UniProt:
C4R1W1
LinkDB
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Position
2:complement(1588199..1589473)
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AA seq
424 aa
AA seq
DB search
MQTFTKNRSASRSPRELNEQIMSHSEYDENKQRVSEATSADRFYEPKLSSYPNVSIEESD
ENEEFYTPGSENLYHCRMRIAKWSLKQTSRMHKGFRLFVKNNSLNEILMEKRRVNALYST
FCLNNSQSLTGRCISIVRVSPDDQAVAAGSWDGNTYILNSQDLSLRRVLYGNNSKIGGID
WYYDSRIIATSQSDGTINLFQYNTDTDTKNTETNNSRDSKLQGHNDRVARLSFHPMGRYL
ASASFDSTWRYWDVETQQQLLLQEGHTKPVFTVEHQPNGSLISSAGLDGIVKIWDLRLGK
CISNLEGHMGSIYGSSWRYNGYELATASSDGSIKIWDMRMQKEKVSIPAHSKLISDVRLL
DNVMISSSYDNTINIFSSDNWVKIKTIKGHTDKVMSCDITKSGQSIFSSGWDRTIKLYKS
AKEY
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacgttcaccaagaatcggagtgcttccagaagtccaagggaattaaatgaacaa
attatgagccacagcgaatatgatgagaataagcaaagggtatcagaagcaacatctgca
gatcgcttttatgagcctaagctttcatcctaccccaatgtgtctatagaagaatcagat
gaaaatgaggaattctacacaccaggatccgagaatttataccattgtcgcatgagaatt
gccaagtggtcattaaaacagacttcaaggatgcacaaaggctttagactgtttgtaaaa
aacaatagtttgaatgagattttaatggagaaacgcagggttaatgcactgtattccaca
ttttgtttaaataattcccagtctctaacaggtcgatgtatctctattgtaagagtatca
ccggatgaccaagcagtcgctgcaggttcttgggatggtaatacgtacatcttgaattct
caagacctaagcctgcgaagagttttatatggaaacaatagcaaaataggtggcattgat
tggtactatgacagcaggatcatagcgactagccaaagcgatggtactatcaacctattt
cagtacaacacagacacagatactaaaaatactgagaccaataactccagagattcgaaa
ctacagggccacaacgaccgtgttgcaagactctctttccatcctatgggtcgttactta
gcgagtgcttcattcgattcaacatggcggtactgggatgtagaaacacagcaacaatta
cttcttcaagaaggccacacaaaaccagtgttcacagtagagcaccaaccaaatggatct
ttgatatcatcggcagggctagacggtattgttaaaatatgggatttgaggttgggaaag
tgtatttcgaacctagagggtcacatggggtctatttacggttcatcttggaggtacaat
ggatatgaattagccacagcctcgagtgatggcagcattaaaatctgggatatgcgaatg
caaaaagaaaaagtatccattcctgctcactccaaacttatttcagatgtcaggttgcta
gataatgtaatgattagttccagttacgataatactatcaatatattcagcagtgataac
tgggtcaagattaaaactatcaagggccatacagacaaggtgatgagttgtgacatcacg
aaaagtggccagtcaattttcagctcaggatgggatagaacaattaagctgtataaatca
gcaaaagagtactaa
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