Komagataella phaffii: PAS_chr2-2_0436
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Entry
PAS_chr2-2_0436 CDS
T01092
Name
(RefSeq) Involved in exosome mediated 3' to 5' mRNA degradation & translation inhibition of non-poly(A) mRNAs
KO
K12600
superkiller protein 3
Organism
ppa
Komagataella phaffii
Pathway
ppa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAS_chr2-2_0436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr2-2_0436
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
PAS_chr2-2_0436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_8
TPR_14
TPR_16
TPR_2
TPR_22
TPR_1
TPR_CcmH_CycH
ANAPC3
TPR_9
TPR_17
TPR_11
DUF6400
Motif
Other DBs
NCBI-GeneID:
8199139
NCBI-ProteinID:
XP_002491753
UniProt:
C4R1U9
LinkDB
All DBs
Position
2:complement(1568863..1573071)
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AA seq
1402 aa
AA seq
DB search
MSVKKHLKAAKNALVSNDPDSCIEYAEEVLNLEQDNYFANIFLGKAYHLRSDALNATKYY
KTCCEIDPMNELGWKGLLLLARESDDYESFLSILKGYAEIKTKKNESLQEIAKEVEIYLK
KFEKNQDLCIAVLDSTTSFGFLGRLVGNPIIPEERSLILIIDKLKHKEEGVIATNIKRAK
IKTANNIPLEIQNKLNSIKWAVYSKSMLPDYMSRLLEICEDDDLQKKYNHLWLSYQLDVL
SCAPNGDAKTGLQRRIFVACEGIVAVKRDVRLAWDIYLNWLDPQNVDDLPLWLLCDYIRL
FGMEGLGSILYGFVYSDYSNYSEDKVRKYLTTEETYSEENSEGKRAVHFVDVQNDEELLN
QFKSDLTVSTALNDAELMSFYVKSIEKASTSLLACRIVSEFYLSLKEYKFGLMYCRKGIN
LLTKVLKDYGLSLPHTKESLLLDLASIYTYYDAPKDHPRAFKLYESILQKNPSNPKAKIG
KSLIFLQLGEFNKAKELLQTIFDANLEAKAYLGWCEINLGNLEFGRNLLTSCLKDTSLQD
EEMKVEIQWRLAHSYLQEVQEVKNLHDRYLVEGNIREAYSNLVVCLKQDATYAPAYTTLG
IVYEDYLNDSKRANKCYYKAFELDIRQLESARRLVVNFALEPDWESVRVLAQRVVDSDTS
RSILEGAVDPAWPYRSLGCALLEVQEDVKAIACFQSALRLDSKDTESWVGLGQAYLSGGR
LEASIKVFNHILNNLDSNWFTSYMLALSLSYGGQFAEGMSILQKLHSTRPKEKCILTALI
ESFLTKSQDDLSRGFVGRCIEASIISLDFVFQLSEVDIHCYKSWKYLSEAILIFTKVKNS
LPSYYVNKISAISKRVAISRSDLCEMGDGLEYRKGLLVEAESATHFDRAISYMVQSAKTA
IQVLSQKSSNKLRASLYYNLGLIYYHAFTLTNKLLYLKCSIKPLQRAILIEPLVADYWIA
LGNCTILKNARVAQHCYIKASSISSINHSVFVNLGALYLIAGDTDLAKISFHRALSMQPN
EYLAWEGLALSRNERTPDATSTFSLFAHAMVLSNGKSPLAQLLYGFQVLKKFAMQNKFYG
HTITERQEISLACGLMLRYLKLDSENEFALFVTLSLIELTQKFELGVELAKNLFSSLERT
YRERGSVSVLYQLTAAKSQQARLYLGSGQYGNAIMAAKMAMDMSEDDVLPRNSHVLKCVL
SSRSVIALSYFFNGQLSKALSQLKVCLENSDSYRLVILLAQILHTFGNQDAKTVAMEELF
NHIEKRDSSLPITLTMGAIAISEDLEDLLPVVNEDLKSLSFDQLAADSSRNVPQMVHLIN
RKLDIKENVWQKVAFLFPNDGKTWSKLDNDVALEVFYNSKSSSSSLSRSSVKTGRVINIQ
RGIFLDPSQEVGYEALVKCIPT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaaagaaacatctcaaggcagcaaaaaatgccttagtctccaatgatccggac
tcgtgtatagaatatgctgaggaagtattgaacttggagcaggacaactatttcgcaaat
atttttttgggaaaagcttatcacttgcggtctgatgcattgaatgccactaaatactac
aagacttgttgtgaaatagatcccatgaacgaactaggatggaaaggactcttgttgttg
gcaagagaatcagatgactatgagtcatttctcagcattttgaaagggtacgctgaaatt
aaaactaagaagaacgaatctttgcaagagattgcaaaagaagttgagatttacttgaaa
aaatttgagaagaaccaagacttatgtattgctgttcttgatagtactacttcatttgga
ttcttgggcaggctggtgggaaacccaatcattccagaagaaagatcgttgatcttaata
atcgataaacttaagcataaggaagaaggagttattgctacaaacataaaaagggccaaa
ataaagacagctaataatatacccctggagattcagaataaattaaactctatcaagtgg
gcggtgtattctaaatccatgctacccgattatatgtcacgattattggaaatttgtgag
gatgatgacttgcaaaaaaaatacaatcacctgtggttatcgtaccagctcgatgtccta
tcctgcgcacccaacggtgatgctaagactggtttgcagcgaaggatctttgtagcctgc
gaaggtattgttgctgtcaaaagggatgttaggctggcttgggacatttatttgaattgg
cttgatccgcaaaatgtcgatgatttgcccctttggttgctgtgtgattatattaggcta
tttggtatggaaggcttgggttcgatcttatacggctttgtttactctgattactcaaat
tatagcgaggataaagtaagaaagtacctcacgactgaagaaacgtatagcgaagaaaac
agcgaaggaaaaagagcagtgcactttgttgatgtgcaaaatgatgaagaactgctcaac
cagttcaaatcagatctcactgtatccacagccctcaacgatgcagagctaatgtctttt
tacgttaaaagcattgagaaagcttcaacctctctgcttgcttgtagaatcgtaagtgaa
ttctacttatcgctgaaggagtacaaatttggattaatgtattgccgtaaaggtatcaat
ctactaactaaagtattgaaagattatggtttgagtttaccacatacgaaagaatcccta
ctattggatttggcatctatttatacgtactatgatgctccaaaagatcatccgagggct
ttcaaactctatgagtctattttgcaaaaaaatccttccaacccgaaagctaagatcggg
aaatcgttaattttccttcaattaggggagttcaataaggctaaagaattacttcaaaca
atcttcgatgcaaacttagaagctaaggcctatcttggctggtgcgaaattaatttaggg
aatctcgaattcggtaggaatcttcttacttcttgtttaaaggataccagtcttcaagat
gaagaaatgaaagttgagattcaatggaggttggctcattcgtatttacaagaagttcaa
gaagttaagaatttacatgatcgatacttagtcgaaggaaacattagagaagcttattca
aacttggttgtgtgtttaaagcaggatgctacatacgcacctgcttacacgactttggga
atagtttatgaagactatcttaatgactcgaaaagggccaataagtgctactataaagca
tttgagttagatataaggcagctggagtccgcaaggcgattagtggttaactttgctttg
gagccagattgggaatctgtacgagtacttgcacagcgagtggttgattctgacaccagc
agaagtattttggaaggcgcagttgatccggcatggccgtaccgaagtctagggtgcgcc
ttattagaagttcaagaagatgttaaagcaattgcctgttttcagtctgccttaaggctc
gattcgaaagatactgagtcctgggttggattgggtcaagcttatttgagcggaggtcga
ttggaagcttctataaaagttttcaatcatatcttgaataatctagactccaactggttt
acctcgtatatgttggctttatccttatcttatggaggtcagtttgctgagggtatgtca
attcttcagaaattgcattctactaggcctaaagagaagtgtattttaaccgctttgatt
gagtcattcttgaccaaaagccaagatgacttatctagagggtttgttgggcgttgcatt
gaagccagcataatatcattggattttgtttttcagctctcagaagttgatattcattgc
tataaatcttggaaatatctttccgaggctattctcatatttactaaggttaaaaattcg
ttaccaagctactatgtgaacaagatttctgctatttcgaaaagagttgccatttcaaga
agtgatctctgtgaaatgggcgatggtttggagtataggaaaggactcttagttgaagca
gaaagtgcaacacattttgaccgagcaatatcctacatggttcaaagtgcgaagaccgca
attcaggttctttcacaaaaatcctcaaataagttgagagcttccttatattacaatctg
gggttaatatattatcacgctttcacattgacgaataagctcctctatttgaaatgttcg
attaagcctctacagagagcaatcctgattgaaccattggtggcagattattggatagct
ctcggaaattgtactattctcaagaacgctcgagttgcccagcactgctatattaaggcg
tcatcaatatcctcaattaatcactccgtgtttgttaatttgggagcactatatttaatc
gcgggcgacactgatttagccaaaatttcgtttcatagagccttaagtatgcaaccgaac
gaatatttggcttgggaaggcctggccctatcaagaaatgaacgtaccccagatgcaact
agtacgtttagccttttcgcacatgccatggtgctctccaatggaaagtcgccccttgca
caactcttgtacggatttcaagttttgaagaaatttgcaatgcaaaacaaattttacgga
cacactattactgaaaggcaggagatcagtttggcttgcggcctcatgttgaggtacctc
aaattagattcagagaacgagtttgcgttattcgtgacattaagtttaatcgaactcact
caaaagtttgaacttggtgtagaattagcgaaaaacttgttcagttcactagaaagaact
tacagagaaagagggagtgtaagtgtattgtatcaacttacagcagccaaatcacaacag
gcaagactttacttggggtccggacagtacggcaatgcgattatggctgcaaagatggcg
atggatatgtcggaagacgatgttctacctcgaaattcacatgtcttgaaatgcgtctta
tcatctagatcagtgatagcgctttcttatttcttcaatggccagctttcaaaagcactg
tctcaactgaaagtttgtctcgaaaattcggattcctatagattggtcatcttgcttgca
caaatccttcacacttttgggaaccaggatgcaaagacagtagcaatggaagaattattt
aaccatatcgagaaacgagattcttccttaccaattaccctaactatgggtgctattgct
attagtgaggatcttgaagatttacttcctgtggtaaatgaggaccttaaatcactatcc
tttgatcaattagctgcagacagctccagaaatgtaccacaaatggtccatttaatcaac
cgtaaactggacattaaagagaatgtatggcagaaagttgcatttctattcccaaatgat
ggcaaaacctggtccaaattggataatgacgttgcacttgaagtcttttataattcaaaa
tcttcgagttcttctctcagtaggtcttctgttaaaacgggaagggttatcaatatccaa
aggggtatattcttagatccctcacaagaagtaggttacgaggcattagttaaatgcatt
ccgacataa
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