Komagataella phaffii: PAS_chr2-2_0445
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Entry
PAS_chr2-2_0445 CDS
T01092
Name
(RefSeq) Protein with ubiquitin-like N terminus, recognizes and binds damaged DNA (with Rad4p)
KO
K10839
UV excision repair protein RAD23
Organism
ppa
Komagataella phaffii
Pathway
ppa03420
Nucleotide excision repair
ppa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
PAS_chr2-2_0445
09124 Replication and repair
03420 Nucleotide excision repair
PAS_chr2-2_0445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
ppa03051
]
PAS_chr2-2_0445
03400 DNA repair and recombination proteins [BR:
ppa03400
]
PAS_chr2-2_0445
Proteasome [BR:
ppa03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
PAS_chr2-2_0445
DNA repair and recombination proteins [BR:
ppa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
PAS_chr2-2_0445
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Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
UBQLN1
CUE
Rad60-SLD_2
EAD1
Ubiquitin_5
Dsc3_N
AAA_35
Motif
Other DBs
NCBI-GeneID:
8198252
NCBI-ProteinID:
XP_002491744
UniProt:
C4R1U0
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Position
2:complement(join(1552582..1553532,1553588..1553653))
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AA seq
338 aa
AA seq
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MKIVFKDLKKEKVILDVDPTDTILSAKEKLATVKNSDASKIKFVYSGKVLQDDKDFDAFK
VKENDVIIFMLPSVFKKEEPKNLENRIDKTSTESSKTTTIAAPGIAVPPVPVNTSGSFNA
STFAVGNDRENAIRNIMEMGYDRSQVEAALRAAFNNPDRAVEYLLTGLPVNNEEPIAGSR
SAPNDGRSQPVSSTGVESTSTETAPGTDLFEAAAVASSGQQQRENTQRDDLMQIGELIQN
NPEMVEPFLQQIASSNPQLAELIQQNPEEFMRALMEGDNGEGELEDEGVQIQVAPEEEAA
INRLCELGFDRNLVVQVYFACDKNEEMTADLLFSEHID
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatagtttttaaagatcttaaaaaagaaaaagtaattctagatgtggacccgacc
gatactattctttccgccaaggagaagctagcaacagtgaagaattccgatgcttctaag
ataaaatttgtttactcaggtaaggttctacaagatgataaggactttgacgcattcaaa
gtgaaggagaacgacgtaatcattttcatgcttccgagcgttttcaaaaaagaggaaccc
aagaatttggagaataggatagacaagacttcaacagaatcttccaaaacaacaactata
gccgctccaggtattgcagtgcctccagtacctgtcaatacgtctggttcgtttaatgca
tccacatttgcggtcggaaatgatagggagaatgcgatcagaaatattatggaaatgggc
tacgatcgctcacaagtagaagccgccttgagagctgctttcaacaatcctgacagagca
gtagaatatttgcttacaggtcttccagtaaacaatgaagagccgattgcaggatccaga
tcggctccaaatgatggccgaagccaaccagtttcaagtacaggtgttgaatctacgtcc
actgagacggcgcctggaacagacctattcgaagctgccgcggtggccagtagtggtcaa
caacagcgagaaaatactcagcgtgacgatttaatgcagattggggaactcattcagaat
aacccagaaatggtagaacctttccttcagcaaattgctagctccaatccccaattggca
gagcttattcagcagaatccagaagagtttatgagggcattaatggaaggtgataatggt
gagggagaactagaagatgaaggtgttcagatacaagtagcacctgaggaagaagcagca
attaacagattatgtgagcttggtttcgatcgtaaccttgttgtacaggtgtacttcgcc
tgtgacaaaaatgaagaaatgaccgccgatctcttatttagtgagcatatagactag
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