Komagataella phaffii: PAS_chr3_0333
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Entry
PAS_chr3_0333 CDS
T01092
Name
(RefSeq) Subunit of cleavage polyadenylation factor (CPF)
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ppa
Komagataella phaffii
Pathway
ppa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PAS_chr3_0333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr3_0333
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PAS_chr3_0333
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Forkhead_N
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
8199466
NCBI-ProteinID:
XP_002492550
UniProt:
C4R485
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Position
3:complement(654855..655799)
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AA seq
314 aa
AA seq
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MDEDDEYLYGSDDEQPQQIGAPETKTASSEKSSTAVKTETGPVSDDEDDNDNSDYSDSDS
DIDIVIGALEPSTQPAASTTASSAVPEDNPGENDDAATQVPSAAGKLRIATGSLDVDKVG
EYDGKPITQLELQDLKEKPWRLPGSDLADYFNYGFDEFSWSYYCSKQDKTRKEFNPAKLM
NELLPAGGFPPSGMPPMPGMPGMPPMPGFMPGMPGMPPMQGMQGMQGMPPMQGMPSMPSM
PSMPGMPPMFNNNPANGSSSSSAQQQQAPKRPVNERDSADRERERNRERDRERDAYRDRD
RDRDRDRDRRRRRN
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggacgatgaatatctgtatggctccgatgatgagcagcctcagcaaataggt
gcaccggaaacaaaaacagcttcatctgaaaaatcttctaccgcagttaaaaccgaaact
ggaccagtatcggatgacgaagatgataatgacaattcagactatagtgattcagattca
gatatcgacattgtcattggggctttagaaccaagtacacaaccagctgcttctacaact
gcctcttctgctgtgccagaagacaatcctggtgaaaatgacgacgcagccacgcaagtt
ccgtcggctgctggtaaactaaggatagctactggttcgttggacgttgacaaagtggga
gaatatgacggaaagccaataactcaattggagctgcaggacttgaaggaaaaaccatgg
agattaccaggttcggatcttgcagactatttcaactatggatttgacgagttttcatgg
tcgtattactgttcgaaacaagataaaacaagaaaggaatttaaccccgccaaactaatg
aatgaattacttcctgcaggtggatttcctccttcaggaatgcctccaatgccagggatg
ccaggaatgcctccgatgcctggattcatgccaggtatgccaggaatgccaccaatgcaa
ggaatgcagggaatgcagggaatgccaccaatgcaaggaatgccttcgatgccatcaatg
ccttctatgccgggtatgcctccaatgtttaataataatccagccaatggatcatcctct
tcttctgctcaacaacaacaggctcccaaaaggccggtaaacgagagagatagtgctgac
cgggagagagaaagaaacagagaacgagacagggagagagatgcttatcgagacagggac
agagacagagacagggatagggatagaagaagaagaagaaactga
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