Komagataella phaffii: PAS_chr3_0442
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Entry
PAS_chr3_0442 CDS
T01092
Name
(RefSeq) Lsm (Like Sm) protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ppa
Komagataella phaffii
Pathway
ppa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PAS_chr3_0442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr3_0442
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PAS_chr3_0442
mRNA degradation factors
5'-3' decay
Lsm complex
PAS_chr3_0442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
8199570
NCBI-ProteinID:
XP_002492668
UniProt:
C4R4K3
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All DBs
Position
3:859462..859935
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AA seq
157 aa
AA seq
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MTQNQNRSQTAGLSDVFQNDSEKDLYLESYMYTTAAALVGSIDKIVTVTLREGRVFIGIL
RTFDQFANLVLQDTVERIYIGDDKYAEAPQGVFLIRGENVSLVGEIDLDQQDKDLEKRSQ
IPFPEAQRIRKELVAAKQAKTTKERELMLSKGFEPQS
NT seq
474 nt
NT seq
+upstream
nt +downstream
nt
atgacccagaatcaaaatagatcacaaacggccggtttgtcggacgtttttcagaacgat
tctgagaaggatctttatctggagtcgtatatgtacactacagcagcagccctcgttgga
agcattgataaaatagtaacagtaacacttagagagggtcgtgtctttattgggattctt
cgaacatttgaccagtttgccaacttggtgctccaagataccgttgagagaatctatatc
ggtgatgataaatatgcggaggctcctcaaggggtctttttgatcagaggtgagaacgta
tccttggttggagagattgaccttgaccagcaagataaggatttagagaagagatcccag
attccctttccagaagcccaaagaattcgcaaggagctggttgctgctaaacaagctaag
acgaccaaagaacgagaattaatgttgagtaaagggtttgaaccccagagttag
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