Komagataella phaffii: PAS_chr3_0453
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Entry
PAS_chr3_0453 CDS
T01092
Name
(RefSeq) Subunit (90 kDa) of TFIID and SAGA complexes
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ppa
Komagataella phaffii
Pathway
ppa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PAS_chr3_0453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr3_0453
03036 Chromosome and associated proteins [BR:
ppa03036
]
PAS_chr3_0453
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
PAS_chr3_0453
Coactivators
SAGA/TFTC/STAGA complex
PAS_chr3_0453
Chromosome and associated proteins [BR:
ppa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
PAS_chr3_0453
STAGA complex
PAS_chr3_0453
TFTC complex
PAS_chr3_0453
SAGA complex
PAS_chr3_0453
SLIK complex
PAS_chr3_0453
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_IFT122_1st
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_SCAP
CFAP251_N
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_VPS8
Beta-prop_WDR75_1st
Beta-prop_DCAF4
DSE1_N
ANAPC4_WD40
Beta-prop_WDR41
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_RIG_2nd
ASA1
PAC11
Beta-prop_EIPR1
Beta-prop_IFT140_1st
LisH
Beta-prop_Nup120_160
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_NOL10_N
WD40_RFWD3
Beta-prop_WDR35_TULP_N
PROPPIN
Tricorn_2nd
Beta-prop_WDR19_1st
WD40_like
Beta-prop_NWD2_C
Beta-prop_pof12
Beta-prop_IP5PC_F
DUF5570
MRJP
Motif
Other DBs
NCBI-GeneID:
8199581
NCBI-ProteinID:
XP_002492679
UniProt:
C4R4L4
Structure
PDB
PDBj
LinkDB
All DBs
Position
3:874605..876773
Genome browser
AA seq
722 aa
AA seq
DB search
MKQEPGDSSDKSAPSGSITPQPKPPQQANVSNQQPQKPQQFSAADLNRIVLEYLNKKGYH
KTESMLRMESSHIPAPPTNIPTPQTTNISRPTAPGRAPEYSDDPATIKRGYSILKSWCES
SLDFYRPELEKFLYPVFVHCYLDLIARGYPSHAREFYDKFSKDHSVLHEYEISKLGGISL
KEHLQENDVAKIFRSHKFKVLIGRTTFNLLLYFLNENDAVGGGVVLRLINQYIEPVITTE
AIAVEREGELNLSEGIVELHTLNNTSIGGEQREISSVDAFNKKPVKLGKLQVDPEYSKEL
EAELKLKDEHEQAAQKKVSTTLLEEYRENFKVDPSDENNPSKDTLPLPLKSAQDLRNDIA
MIQDSRAKIKLSAAQASLPSVCMYTFHNTNNDLTCLKFNDDSTMVASGFQDSFIKLWSID
GSPLRSLLKNDPYNQQNNDGVAVKGSRRLVGHSGAVYGVDFSPDNRYLISCSEDKTVRLW
SLDTYTCLVSYKGHSSSVWDVKFSPMGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDV
DCVEFHPNSTYLFTGSSDKTARMWDIARGECVRVFMGHSGAINCLAVSPDGRWLASAGED
SVVCLWDISTGRRIKAMRGHGRSSIYSLAFSREGTVLVSTGADNSVRVWDVKKNTNSPSA
QPEPINDVTAQGIQKKTEDLRRRKEIVATNDHMSVYFTKKTPVYTVHFTRRNLCLAGGVF
GG
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaagagcctggggattcaagtgataagtccgctccgtctgggtcaatcactcca
cagccgaagcctccgcaacaggctaatgtatcaaaccagcagccacaaaagccccagcaa
ttttctgctgcagacttgaatagaattgtgctggagtatttgaacaaaaagggttaccac
aagactgaatccatgttacgaatggagtcgtcgcacattcctgcacctccaacgaatatc
cccactcctcaaaccacaaacatcagcaggcctactgctcctggaagagcacctgaatat
agtgatgatcctgctacgatcaagcggggatactctatactaaaatcctggtgtgaatca
tccttggatttctacagaccagagttagaaaagtttttgtatccagtatttgtgcattgc
tatcttgatttgattgcaaggggatatcccagccatgccagagaattttatgacaaattt
tcgaaggatcattcagttttacacgagtacgaaatatctaaattgggaggtatttctttg
aaagagcacctgcaagagaatgatgtggccaaaattttcagaagtcataagttcaaagta
ctgattggacgaactactttcaacttgttattgtatttcctcaacgagaatgatgctgtt
ggaggaggggtagttcttcgactcataaatcagtacattgagcctgtgatcacaactgag
gctatagctgtcgaaagagaaggggaacttaatctctctgaaggtattgtggagctacac
actttgaataacacctctattggaggagaacagagagaaatcagtagtgtagatgccttc
aacaaaaaacctgtcaagttgggaaaactccaagttgatccagagtattctaaagaacta
gaagcagagctcaagcttaaggatgagcatgaacaggcggctcaaaaaaaggttagtacc
acgctgcttgaagaatacagagaaaacttcaaagttgatccaagtgatgaaaataatcct
tccaaagacactttaccactgccattaaaatcagcacaagatttacgtaatgatattgcc
atgattcaggattctagggctaagattaaactgagcgcagcgcaagcttctctcccaagt
gtgtgtatgtacacatttcacaacacaaacaatgacttgacatgtctcaagttcaatgac
gattctactatggtcgccagtggatttcaagattcattcattaaactatggagtattgat
ggatcgccgttgagatcgttgttgaaaaatgatccatacaaccaacaaaataatgacgga
gtagctgtaaagggatctaggagacttgtaggccattcgggtgctgtctatggtgttgac
ttcagtccagataacaggtatttgatttcttgttcagaagacaagactgttaggttatgg
tcgttggatacttacacctgcctcgtttcttataaggggcatagttcgtcagtgtgggac
gtcaaattctctccaatgggacactattttgctactgcctctcacgatcaaactgcacgt
ttatggagttgcgatcacatatatcctttaagaatttttgcaggacatttaaatgacgtt
gattgtgttgaatttcatccaaactcgacctatctattcacgggatcaagtgataagact
gcaagaatgtgggatatagcgcgcggagaatgtgtaagagtgttcatgggacacagtggg
gccatcaattgtctggcagtgtcacccgatggaagatggctagcatcggcaggtgaagat
agtgtagtctgcttgtgggacatttcaactggacgaaggatcaaggccatgcgaggtcat
ggacgcagttccatttattccctggctttctcccgagaaggaactgtgcttgtcagtacc
ggtgccgacaacagtgtaagagtatgggatgtgaaaaagaacaccaactctccttcagcc
cagccagagcctataaatgatgtaacggctcaaggaattcagaaaaagacagaagatcta
cgccgtcgtaaggagatagtcgccaccaatgaccatatgtctgtctatttcactaaaaaa
actccagtatatacagttcacttcaccagaagaaacctgtgtctggctggtggtgtgttt
ggaggttaa
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integrated database retrieval system
