Komagataella phaffii: PAS_chr3_0672
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Entry
PAS_chr3_0672 CDS
T01092
Name
(RefSeq) Predominantly nucleolar DEAH-box ATP-dependent RNA helicase, required for 18S rRNA synthesis
KO
K14781
ATP-dependent RNA helicase DHR2 [EC:
5.6.2.6
]
Organism
ppa
Komagataella phaffii
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppa03009
]
PAS_chr3_0672
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PAS_chr3_0672
Ribosome biogenesis [BR:
ppa03009
]
Eukaryotic type
90S particles
Helicases
PAS_chr3_0672
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
RsgA_GTPase
nSTAND3
AAA_29
Pullul_strch_C
Motif
Other DBs
NCBI-GeneID:
8200372
NCBI-ProteinID:
XP_002492899
UniProt:
C4R584
LinkDB
All DBs
Position
3:1288462..1290951
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AA seq
829 aa
AA seq
DB search
MSVDETLNGSQPVDINQIVENGDKKKSKRKKKSKSRENDSAIVVNEPTSVVKTTVLQNKK
IKFDKLEEIEVAPQPEIASDKDSANGNNPNFIQSSTIETVEERIIERERPILRSSPQVLQ
KKGKELPKNPKVIEFYSDNEDEDDFDFKGLAFDKSSFSKENIRKIKQKAEELLEIRKTLP
VFKAKDELIPTLLKNKVNILIGETGSGKSTQIPQFLMPLNSKGIAVTQPRRVAAINLATR
VSQEHGCVLGTHVGFSVRFNNATRNDTKLKYLTDGMLLRELMIDPLLSRYSTIIIDEAHE
RTILTDLLMGFLKSLVTVERKDDPDFRVIIMSATLDAEKFSKFFADAPILFVEGKMYPVE
RSYVKAPVDDIVDTVVKTLVHLNQGEQKGDVLCFLPGQEEIDKAEAVLNQLAPLLPKEAP
RIVPLPLYAALPSAKQAKVFLPVKNHQRKLILATNIAETSVTVPGIKYVVDSGLRKVKVW
RHQLGLSTLLTTPISKASATQRSGRAGRESEGKCFRLYTESDYFKLIEQTEPEIVRSDII
SPVLMLKRLQVDDILNWHWLENPGQEALIAALQQLYSLQAIDEAGKITDLGEKMTVLPLA
PHLSSVLITGHENGCLEPVIDIVSCLSVDNLILNPASDRRDEVNERRRAVCNLGNRYGDL
MMMKELFDMYLDMPDSSERKRWCKELDLSFKGFKNVLRVREQLRQYMNNLYSKEGASILA
QESEEYDEELGITTSNKPMDVDSILKSFLKGFINNTAIGMPDRSYRTVTTGQLIAIHPSS
MVFGKKLDAIMYIEYVYTTRGYARNVSSVQLEWLQEVAPHLLGTRTSIN
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtagatgagacgttgaacggtagtcagccagttgatattaatcaaattgttgag
aatggggataaaaagaaaagcaagagaaagaagaagagtaaatctcgggagaatgattca
gctatagtagttaacgaacccacaagtgtagttaaaaccaccgttctacagaataaaaag
atcaagtttgataaactggaggaaatagaagttgccccacagccagaaatagcatccgat
aaagactctgcaaatggcaataatccaaatttcatacagagtagtactattgagactgtc
gaggaaaggattatcgaaagagagagacccattctgcgatcttcgcctcaagtcttacaa
aagaaagggaaagaacttcctaagaatcccaaagtgatagagttttacagtgacaatgaa
gatgaagatgacttcgacttcaaaggattagcatttgataagagcagtttctctaaggag
aatattcgcaaaatcaagcaaaaagctgaggaattattggaaatcagaaaaaccttacct
gtattcaaagctaaggatgagctaatccctactcttttgaaaaataaggtaaatattttg
attggtgaaacaggttctggtaaatctactcagattcctcagtttttaatgccattgaac
tcaaagggtatagctgtaacgcagcctcgtagggttgctgctatcaatttggctactcgt
gtttctcaggaacacggttgtgtgctggggacccacgtcggtttttccgtaaggttcaac
aatgccacgagaaatgatacaaagctaaaatacttgacggatggtatgttactgagagaa
ctgatgatagatcctcttttgtctcgctattctacgattattatagatgaagcccatgaa
cgtaccatcctgacggacttgcttatgggatttctgaaatcattagtaaccgttgagagg
aaagatgaccccgattttagggtaatcatcatgtcggctaccttggatgctgaaaagttt
tccaaattttttgctgacgctccgattctatttgtcgaaggtaaaatgtacccggtggaa
cgttcttatgttaaagctcctgtggatgacattgtagacacagttgttaaaactctagtt
cacttgaatcaaggggaacagaaaggagatgtcttgtgctttcttccaggccaggaagag
attgataaagctgaagccgttttaaaccaacttgcacctttacttcctaaggaagcgccg
aggatagtgccattgcccttatatgctgctctgccttctgcaaagcaagccaaagtattt
ttgccagttaaaaaccaccaaagaaaactaatcttagccaccaatattgctgaaacatct
gttaccgttccgggcattaagtacgtggtggactcaggcttaagaaaggtcaaggtttgg
agacatcagttgggtttatccacgcttctgaccactcccatttccaaagcttcagctact
caacgaagtggaagagcaggaagagaatctgaaggaaaatgcttccgattatacacagag
tcagattactttaaattgattgagcagacggaaccagagatagtaagatcagacattata
tcccctgtcttgatgttaaaacggttacaagtggatgacattttgaactggcactggtta
gagaatccaggccaagaagctctcatagcagcactgcaacaattatacagtcttcaagct
attgatgaagctggtaaaatcaccgatctgggggagaagatgaccgttttgcctcttgct
ccacacttgtcatcggtcttgattaccggtcacgagaatggatgcctggagccagtcatt
gatatcgtttcttgcctctctgttgacaatcttattttgaacccagccagcgacagaaga
gatgaagttaatgaaaggagaagagctgtatgtaacctgggtaaccgatatggggatctg
atgatgatgaaagagctttttgatatgtatttggatatgccggactcttcagagagaaag
agatggtgcaaagaactagatttgtccttcaaagggttcaagaatgtgctccgagtccgg
gagcagcttcgtcagtatatgaataatctttattcgaaggaaggtgcatcaattcttgct
caagagtcggaggagtatgatgaagagctaggtatcacgacaagcaacaaacccatggac
gtggattctatactgaaatcttttttgaaagggttcatcaacaatacagcgattggaatg
ccggatcgatcttacaggacagtcactacaggtcaattgatcgccatacacccatcctcc
atggtatttggaaagaagcttgatgcaatcatgtacatagaatacgtttacacaaccaga
ggctatgccagaaatgtctccagcgtgcaattagagtggcttcaagaagtggcaccccat
cttcttggaactcgaacatccataaactaa
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