Komagataella phaffii: PAS_chr3_0885
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Entry
PAS_chr3_0885 CDS
T01092
Name
(RefSeq) Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
ppa
Komagataella phaffii
Pathway
ppa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PAS_chr3_0885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppa03009
]
PAS_chr3_0885
Ribosome biogenesis [BR:
ppa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
PAS_chr3_0885
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Utp12
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_1st
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR36-Utp21_2nd
CsiD
Motif
Other DBs
NCBI-GeneID:
8200240
NCBI-ProteinID:
XP_002493121
UniProt:
C4R5V6
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Position
3:1726152..1727957
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AA seq
601 aa
AA seq
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MSSCFDSDGELFALVSKDLDRCKLRVSSIEFLATKTIISQLYELEKGEEILSTAFASSDI
FATGKRSKSHQQSLETKTVAIGLNTGKVLLYSPANNDLIATLESPSGVGITDFHFCEQNF
RGYAVDLNGKIHEFDLKSHNLLRSFTLEDTGIRKVSSLVYEGSLHLVLSSNSIYIYDLKT
SSIALSFPGHVATISNIVIKDSTIFSGAEGDRFVNCYSLTTKKILKVVVFQSPVVTFRYG
ESQGHGVLIGVTEDGNIELFNDPLATNTMQKSSKRRRQVESINTGVIIDINRPEDRNAAN
ENMKFIDLFIKGSSIIVSWMEGLVPVFDTLSWVKTVDDFATLQIITDTHLVKDRVASHKD
QGLELHDSAAPKLYTEKNAVVTMGDNFKDLEVDQEDLETFGDQLKQAPIKAARKKKLTTD
SLATVLTQALKSNDHSLLESVLNNRDENVIKKTISRLDSIYVVNFLDRLSERILRNANKQ
TALIVWIKWVMIIHGNYLMQQPNLFSSLSTLYVILSNRSKTLPKLLQLQGRVNMVLNTID
MRKSILQDKETGESDDDSDLDEDVVEYVEEVEDGILVEASESEDEEMVAENGYSESDDDD
F
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagttgtttcgacagtgatggagagctttttgcccttgtgtcgaaagatctggac
cgttgtaaactacgtgtatcctccattgaatttttggcaacaaaaaccattatttcacag
ttatacgaactagagaagggagaagagattcttagtacagcttttgcttccagtgatatt
tttgccacaggtaaaagatcaaagtcacatcaacaaagtctcgagacaaaaaccgttgct
atcggtttgaacacagggaaggtcttattatattcaccggctaacaatgaccttattgct
acattggaatcaccttcaggtgttggaattacggatttccacttctgtgaacaaaacttt
cgtggctatgctgttgatctaaacggtaaaatacatgagttcgatctaaagagtcacaac
ttgttgagatcgtttaccctggaagacactggtatcagaaaggttagcagtttggtgtac
gagggttccctacatctcgtgctgagctctaattcgatatatatctacgatttgaagact
agctccatagctctcagctttccaggacacgtagccaccatttccaacatagtcatcaaa
gattctaccattttctccggtgcagaaggtgatcgtttcgtcaattgttactccctcacc
accaagaagattctaaaggttgttgtctttcaatccccagtggtaacgttcagatatggt
gaatctcaaggccatggtgttcttattggtgtcacagaagatggaaacattgaactattc
aacgatcctcttgctaccaacaccatgcaaaaatcttccaagagaagaagacaggtagaa
tcgataaataccggagttatcatcgacatcaaccgtcctgaggacagaaatgccgcaaat
gaaaacatgaagttcattgatttgtttattaaaggttccagcataattgtgtcgtggatg
gagggcttggtacctgtttttgacaccttaagctgggtaaagacggtagatgattttgca
acgttgcaaataattacagatacgcatttggtgaaggaccgagtggcatctcataaagac
cagggacttgaattacatgattcagctgcaccaaaattgtataccgaaaagaatgccgtg
gtaacaatgggagacaactttaaagatttggaggtagatcaagaggatttagagacattc
ggtgatcagctaaaacaagctcctatcaaggctgcacgaaaaaagaagctaactacagat
tctctggcaactgttttgacacaagctttaaagagtaacgatcattctctgctggagtct
gttcttaataatagggacgagaacgtcatcaagaagaccatatccagattagattctata
tatgttgtgaacttcctggacagattgagtgaaaggattctcaggaacgccaacaaacag
acagcgttaattgtatggatcaaatgggtgatgatcattcatggcaactacctaatgcag
cagcctaatcttttctcaagcttatcgaccttgtacgtgattctctccaacagatcgaaa
acgttacccaaattattgcaactgcaagggcgtgtgaatatggtattgaacacaatagat
atgagaaaaagcattcttcaggataaagaaacaggcgaatctgacgacgattcggattta
gacgaagatgtcgtcgaatatgtcgaagaggttgaagatggtattcttgttgaggcaagt
gaatctgaagacgaggaaatggtcgcagagaatggctattcagaaagtgacgacgacgac
ttctaa
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