Komagataella phaffii: PAS_chr3_0969
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Entry
PAS_chr3_0969 CDS
T01092
Name
(RefSeq) tRNase Z, involved in RNA processing
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
ppa
Komagataella phaffii
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppa03016
]
PAS_chr3_0969
Enzymes [BR:
ppa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
PAS_chr3_0969
Transfer RNA biogenesis [BR:
ppa03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
PAS_chr3_0969
Prokaryotic type
PAS_chr3_0969
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_4
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
8199716
NCBI-ProteinID:
XP_002493212
UniProt:
C4R647
LinkDB
All DBs
Position
3:1881100..1883550
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AA seq
816 aa
AA seq
DB search
MFEITTVAHPNDDLNHPLIVVEEKINSKKFFIGSVTEGIQRTVNERKIKLPKTESVFLTG
KLSWNRIGGLPGFLLTVFDQKSRDSFFIVYGNPLLKYVIATWRYFIFRVGMNLDVKIVQD
QEEELITDSFKANVINISPAKPKATNNVSTSLLDAIISHIFPLNINLNNYSENRKNFDRI
SQVKLPTVDGLSNSFSTNYLIDFHPVRGKFNVKKAIELGVPKGKTFAQLTKGEDVLLPDG
VTVVKSSDVVEESKSFPKLLVLDIPSDEYLEPTLHNPLIVSSSQDIGIVYIFLNEKCNLS
RIHPILLNYFNANSHCQFVVSHKDITNNLINFTGASLVSLKLKALFPNFFQLPYSSLSNG
TPFNEKFASNVHILNTRSCPVVLKPGSPDAVIVENSLESVNQFWKARFDESLLDTFGISF
DSIEPYINDNKLVTSGSLSDSETLKDKVQVVTLGTGSSLPSKYRNVISTVLRVPYTQDGK
LQYRSIIMDGGENTIGSIKRIYGPDYPKFFKELQCIYLSHLHADHHLGIISLIEERFKHN
NTDLYLIIPWQYETFLKEWSRLPNQDDLPDLSRLKIFSCEQFHTNPHPSLEQVSFEQMIN
AKQTITPKKIPLQRISTETMFKDLGLTGIQTCSAIHCEWAYSVGFTFDIGGDAFKVSYSG
DTRPNHRFAFEIGKNSDLLIHEATLEDELMEDALSKRHSTISEAIYVSMLMTARKLILTH
FSQRYPKLPDMDSLKKVWTFIDGNYDENLELFQKSYVFKKFQLDAQQRFNAKQMGILYAF
DNMVINYNEIDQQLQQIDAFGRERLELLFSSKEKEL
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaattaccactgtggcccacccaaacgacgatcttaaccatcctctgatcgtg
gttgaggagaagataaactccaaaaagttcttcattggatcagttacagaaggtattcag
agaacggtcaatgagaggaaaatcaagctgccgaagacggaaagtgtttttctaacggga
aagttgagttggaacagaatcggtggtcttccagggtttctcttgactgttttcgatcaa
aagtccagggacagtttcttcatagtatacggtaaccctctgcttaaatacgtgattgcc
acgtggaggtacttcatttttagagtaggcatgaacctggatgtcaaaattgttcaagac
caggaggaagagttgattactgactcattcaaagctaatgtgattaatatcagtcctgcg
aaaccaaaagctacaaacaacgtttccacgtcacttctggatgcaataatttcccacata
ttcccgctcaatatcaacctgaataattattctgaaaacagaaaaaactttgatcgtata
tcccaagtcaagttgcccacagttgatggtttgagtaactccttttccactaattatctt
atagacttccatcccgtaagaggaaaattcaatgtcaagaaagctatcgagcttggggtt
cctaaaggtaagacgtttgcccaactaactaaaggagaagatgtccttttaccagatgga
gtaacagttgtaaaatcatctgacgttgtggaagagtccaaaagcttcccaaaactgtta
gtgctggatattccttctgacgagtatctcgagccaacattgcataatccgttgatagtc
tcatcctcccaggatatcggaatagtatacattttcctgaatgaaaagtgtaacctaagt
cgaattcatccaatactgttgaactatttcaatgccaattctcattgccaatttgttgtt
tcacacaaagacataaccaataatcttataaacttcacaggagcatcgttagtatcactg
aaactcaaggctttgtttccaaatttttttcaactgccttattcatcactttcaaacggc
actccgttcaacgaaaaattcgcatctaatgttcacatacttaatactcggtcttgccct
gttgtgttgaagcctggtagtcctgatgctgttatcgttgaaaactctttggaatcagtc
aaccagttctggaaggctcgtttcgatgagtcgttactagacacatttggtatatcattt
gacagcattgaaccatatattaacgacaataagctagtcaccagtggctccctttcggac
tcagaaacgttaaaggataaagttcaagtggttactttgggtacagggtcgtcactgcca
tccaagtaccgaaatgttatttctactgttctgagggttccttacactcaagatggcaag
ctacaatacagatccattataatggacggaggagagaatacaattggttctattaaaagg
atatatgggccggattaccccaaattcttcaaagaactacaatgcatttatttgagtcat
ctacatgccgaccatcatctcggtatcatttctctgatcgaagaacgatttaaacacaat
aatacagacttatacctcattattccctggcaatatgagactttcctaaaagagtggtcc
cgactgcccaatcaagatgacctgccagatttgagtaggctgaagatattcagctgtgag
cagttccacacaaacccgcacccttcgttggaacaggtcagctttgaacaaatgataaat
gctaagcaaacaatcacaccgaagaagatccccctgcagcgtatttccacagaaaccatg
ttcaaagaccttggtctgacaggcattcagacctgcagtgccattcattgtgaatgggcc
tactcagtgggttttacatttgatattggcggagacgccttcaaagtcagctactcaggg
gacaccaggccaaaccaccgttttgctttcgagattggtaagaatagtgatcttctaatc
catgaagcgacccttgaggatgaactaatggaagatgcgctaagcaagagacactctact
atttcagaggcaatatatgtttcgatgcttatgaccgcacgcaagctgattctcacgcat
ttctcgcagcgctatcccaagctgcctgatatggattctctgaagaaagtctggacgttt
attgacggaaactacgatgagaacctagagctattccagaaatcttacgtcttcaaaaaa
ttccagctggatgcacaacaacgtttcaacgccaagcaaatggggatactgtacgccttt
gacaacatggtgatcaattacaatgaaatagaccaacagttgcaacagatcgacgcattt
ggaagagaaagactggaactactattcagttcgaaagagaaagagctctaa
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